DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019372
GeneSmu1
SynonymsSMU-1
Desc.smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
LocusNM_021535 chr4:40682682-40704918(-)
DB links


Entrez 74255
MGI 1915546
Ensembl ENSMUSG00000028409
Vega OTTMUSG00000006607
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019948
(v2.0)
Smu1NM_02153574255
12.571294.163637.875439.334956.078116.476720.10727.873453.554321.5721
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019372
(v1.0)
Smu174255
Maternal RNA0.95899
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019948
(v2.0)
Smu174255
534/377-0.0105428/3770.0667117/3771.8796318/3771.080789/377-0.0246552/377-0.0491
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019948
(v2.0)
Smu174255
252/1640.1063210/1640.2391113/1642.9734302/1642.194934/164-0.2067171/164-0.5351
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019948
(v2.0)
Smu174255
64.408312451.94
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019948
(v2.0)
Smu174255
23.22658029.03
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019372
(v1.0)
Smu1NM_02153574255
97.850926.260629.294738.9114.2691
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019372
(v1.0)
Smu1NM_02153574255
138.02332.935338.124950.78219.6269
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
102.3124.5974328.6509
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
99.866725.996920.6792
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
33.442627.5902
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
102.3724.5344622.6802
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
27.122437.569237.0716
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
50.233150.9478
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019372
(v1.0)
Smu1NM_02153574255
29.04122.2494
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019372
(v1.0)
Smu1NM_02153574255
158.794107.708
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019372
(v1.0)
10653H3101F09-3Mm.762782610203K23Rik74255
U024961NAP121382-0012610203K23Rik;TC847449Q9D1I8U,F,24.04943.96953.39743.44593.11923.29393.1515
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019372
(v1.0)
1422442_atMm.289929Smu1NM_021535.474255
3601.55509.751790.41919.5251692.1
0019372
(v1.0)
1432042_a_atMm.289929Smu1NM_021535.474255
2359.1753077.025883.125768.525923.025
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019372
(v1.0)
A_51_P210072Smu1NM_02153574255
11P0.5030.114P
0019372
(v1.0)
A_52_P228318Smu1NM_02153574255
11P0.6380.139P
0019372
(v1.0)
A_52_P461552Smu1NM_02153574255
11P0.5830.118P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019372
(v1.0)
Smu174255
010020