DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019380
GeneSmyd5
SynonymsNN8-4AG
Rai15
Rrg1
Desc.SET and MYND domain containing 5
LocusNM_144918 chr6:85381970-85396423(+)
DB links


Entrez 232187
MGI 108048
Ensembl ENSMUSG00000033706
Vega OTTMUSG00000017438
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2019956
(v2.0)
Smyd5NM_144918232187
7.707666.640565.4735975.3092103.58532.016723.63458.1138892.967934.7997
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019380
(v1.0)
Smyd5232187
MGA0.96062
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019956
(v2.0)
Smyd5232187
654/509-0.1509389/509-0.502982/5090.9506149/509-0.4385108/509-0.1773702/509-0.1353
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2019956
(v2.0)
Smyd5232187
312/2120.0445151/212-0.602273/2122.0023109/2120.367731/212-0.6982145/212-1.1392
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019956
(v2.0)
Smyd5232187
61.207411354.17
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2019956
(v2.0)
Smyd5232187
18.03246627.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
6.905843.7961156.031271.849716.8079
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
99.745124.1422836.831183.4175.628
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
7.220692.818774.14163
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
7.048113.757996.02674
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
34.844976.6737
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
7.224892.780166.60992
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
51.876169.373864.2926
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
171.732138.655
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019380
(v1.0)
Smyd5NM_144918232187
0.52038818.134
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019380
(v1.0)
Smyd5NM_144918232187
1.188430
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019380
(v1.0)
13616J0059G07-3Mm.1196MGC29044232187
3.77423.67363.75063.66333.97043.82013.9045
MOE430 N/A
Agilent44K N/A
Proteome N/A