DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019529
GeneSnrpa
SynonymsRnu1a1
U1 snRNP
U1A
Desc.small nuclear ribonucleoprotein polypeptide A
LocusNM_015782 chr7:27972025-27981290(-)
NM_001046637 chr7:27972025-27980779(-)
DB links


Entrez 53607
MGI 1855690
Ensembl ENSMUSG00000061479
Vega OTTMUSG00000031830
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020106
(v2.0)
SnrpaNM_001046637,NM_001285825,NM_01578253607
29.466316.29478.1303444.930248.736671.77648.373117.573344.909576.1984
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019529
(v1.0)
Snrpa53607
Major ZGA0.98587
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020106
(v2.0)
Snrpa53607
686/512-0.0906457/512-0.2795268/5122.6387827/5122.017710/512-3.4945102/512-2.9085
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020106
(v2.0)
Snrpa53607
320/1980.1789185/198-0.213245/1983.8284698/1983.13295/198-3.016639/198-2.8956
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020106
(v2.0)
Snrpa53607
93.756815958.97
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020106
(v2.0)
Snrpa53607
25.17058629.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
16.76245.6081133.148133.510334.3921
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019529
(v1.0)
SnrpaFR108528,FR126320,NM_001046637,NM_01578253607
24.17837.0774535.833235.977137.4937
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
17.526610.77626.11857
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
17.10775.551812.8643
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019529
(v1.0)
SnrpaFR108528,FR126320,NM_001046637,NM_01578253607
13.977514.3144
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
17.536810.628614.1092
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
30.6932.355630.6951
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019529
(v1.0)
SnrpaFR108528,FR126320,NM_001046637,NM_01578253607
57.231155.2745
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
7.0212263.0483
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019529
(v1.0)
SnrpaNM_001046637,NM_01578253607
15.92827.1033
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019529
(v1.0)
565C0118C10-3Mm.4633Snrpa53607
U028296NAP056786-1TC814949,TC814948Q621892.95533.03463.04823.22772.94183.03572.9173
0019529
(v1.0)
1324C0199C03-3Mm.4633Snrpa53607
U028296NAP056786-1TC814949,TC814948Q621892.93283.0123.04033.19093.00283.03152.8608
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019529
(v1.0)
1417274_atMm.386890SnrpaNM_015782.3,NM_001046637.153607
00241.150282.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019529
(v1.0)
A_51_P389978SnrpaBC00322953607
11P0.3850.0667P
0019529
(v1.0)
A_52_P681269SnrpaNM_01578253607
11P0.9090.552P
Proteome N/A