DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019530
GeneSnrpa1
SynonymsU2 snRNP-A'
Desc.small nuclear ribonucleoprotein polypeptide A'
LocusNM_021336 chr7:73205222-73219473(+)
DB links


Entrez 68981
MGI 1916231
Ensembl ENSMUSG00000030512
Vega OTTMUSG00000024902
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020107
(v2.0)
Snrpa1NM_02133668981
15.902328.30169.2322394.3281113.1696.189123.04285.1594679.1102117.538
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019530
(v1.0)
Snrpa168981
Major ZGA0.98346
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020107
(v2.0)
Snrpa168981
626/453-0.0461464/453-0.0814135/4531.827279/4530.629256/453-0.9459418/453-0.7133
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020107
(v2.0)
Snrpa168981
329/2130.1139213/213-0.1156129/2132.8088268/2131.651111/213-2.1199142/213-1.1758
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020107
(v2.0)
Snrpa168981
56.802814240
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020107
(v2.0)
Snrpa168981
23.757510622.41
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
29.41276.4050270.194978.543516.5645
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
106.26114.3525251.721274.50948.2792
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
30.75375.815646.98801
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
30.01866.34073.83474
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
14.38624.51271
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
30.77155.735994.20582
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
64.989575.836954.6378
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
161.056136.571
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019530
(v1.0)
Snrpa1NM_02133668981
21.392637.0851
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019530
(v1.0)
Snrpa1NM_02133668981
65.562134.6533
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019530
(v1.0)
2876C0451F10-3Mm.821Snrpa168981
2.8892.82572.89882.89623.23182.95182.9233
0019530
(v1.0)
5648H3004F02-3Mm.821Snrpa168981
U008186NAP090323-1Snrpa1;TC919814,TC919813P57784U,F,23.93443.80343.70134.17723.91864.24934.036
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019530
(v1.0)
1417351_a_atMm.22362Snrpa1NM_021336.468981
1006.95767.3889.61547.051397.075
0019530
(v1.0)
1417352_s_atMm.22362Snrpa1NM_021336.468981
364.125287.25449.175434.85767.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019530
(v1.0)
A_51_P164270Snrpa1NM_02133668981
11P0.7610.305P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019530
(v1.0)
Snrpa168981
100100