DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019534
GeneSnrpd1
SynonymsSMD1
Desc.small nuclear ribonucleoprotein D1
LocusNM_009226 chr18:10617794-10628228(+)
DB links


Entrez 20641
MGI 98344
Ensembl ENSMUSG00000002477
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020111
(v2.0)
Snrpd1NM_00922620641
94.1706107.607106.356135.515166.11788.053539.181857.7914134.155106.257
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019534
(v1.0)
Snrpd120641
Major ZGA0.97231
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020111
(v2.0)
Snrpd120641
611/3850.1531405/385-0.04389/3851.4594265/3850.788588/385-0.0707564/385-0.0484
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020111
(v2.0)
Snrpd120641
282/1510.3861174/1510.087876/1512.5179247/1512.023212/151-1.519486/151-1.3958
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020111
(v2.0)
Snrpd120641
50.81989951.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020111
(v2.0)
Snrpd120641
19.37246430.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
111.81673.5006100.855114.96728.1821
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019534
(v1.0)
Snrpd1FR243169,NM_00922620641
53.327731.538640.775451.726417.8558
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
116.91434.439280.1908
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
114.11972.762642.874
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019534
(v1.0)
Snrpd1FR243169,NM_00922620641
59.192594.0652
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
116.98233.967547.0227
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
93.3762111.00592.9682
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019534
(v1.0)
Snrpd1FR243169,NM_00922620641
51.167849.8375
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019534
(v1.0)
Snrpd1NM_00922620641
141.93180.0363
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019534
(v1.0)
Snrpd1NM_00922620641
180.491200.644
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019534
(v1.0)
11482H3116G05-3Mm.603Snrpd120641
U018408NAP006057-001Snrpd1;TC799543,TC799542,TC799540P13641U,F,24.39964.2433.69544.21694.24494.20944.2475
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019534
(v1.0)
1416336_s_atMm.603Snrpd1NM_009226.420641
731.151023.525480.325578.925497.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019534
(v1.0)
A_51_P193254Snrpd1NM_00922620641
11P0.710.181P
0019534
(v1.0)
A_52_P214661Snrpd1AK01778820641
11P1.2950.367P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019534
(v1.0)
Snrpd120641
220550