DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019549
GeneSnw1
SynonymsNCoA-62
Skiip
SKIP
SNW1
Desc.SNW domain containing 1
LocusNM_025507 chr12:88790860-88813249(-)
DB links


Entrez 66354
MGI 1913604
Ensembl ENSMUSG00000021039
Featureprotein-coding
GO(BP)
  •   18 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      mRNA splicing, via spliceosome (GO:0000398)
      mRNA processing (GO:0006397)
      RNA splicing (GO:0008380)
      positive regulation of transforming growth factor beta receptor signaling pathway (GO:0030511)
      skeletal muscle cell differentiation (GO:0035914)
      intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (GO:0042771)
      positive regulation by host of viral transcription (GO:0043923)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of mRNA splicing, via spliceosome (GO:0048026)
      retinoic acid receptor signaling pathway (GO:0048384)
      regulation of retinoic acid receptor signaling pathway (GO:0048385)
      positive regulation of neurogenesis (GO:0050769)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      regulation of vitamin D receptor signaling pathway (GO:0070562)
      positive regulation of vitamin D receptor signaling pathway (GO:0070564)
      cellular response to retinoic acid (GO:0071300)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020126
(v2.0)
Snw1NM_02550766354
24.322896.1148118.72251.668456.880242.252546.4515111.61750.108155.4365
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019549
(v1.0)
Snw166354
Maternal RNA0.95286
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020126
(v2.0)
Snw166354
588/3980.0501419/398-0.0419118/3981.8159325/3981.0343102/3980.0926686/3980.1857
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020126
(v2.0)
Snw166354
274/198-0.0439194/198-0.144997/1982.5006238/1981.584625/198-0.9012168/198-0.8307
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020126
(v2.0)
Snw166354
48.296510645.56
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020126
(v2.0)
Snw166354
16.82277323.04
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019549
(v1.0)
Snw1NM_02550766354
99.854982.039938.461439.406432.5205
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019549
(v1.0)
Snw1NM_02550766354
104.4078.8950989.5073
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019549
(v1.0)
Snw1NM_02550766354
101.91281.216282.5603
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019549
(v1.0)
Snw1NM_02550766354
104.4688.7732690.5493
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019549
(v1.0)
Snw1NM_02550766354
35.609338.048534.6676
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019549
(v1.0)
Snw1NM_02550766354
43.04649.15177
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019549
(v1.0)
Snw1NM_02550766354
13.504220.0093
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019549
(v1.0)
1494C0218H03-3Mm.27094Skiip66354
3.97934.02074.17854.05713.96914.0764.0499
0019549
(v1.0)
13598J0058H02-3Mm.27094Skiip66354
U034214NAP121223-001TC805067Q9CSN12.90852.95432.96572.84882.8213.00152.8877
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019549
(v1.0)
1429002_atMm.271174Snw1NM_025507.266354
586.525445.475537.45525.625594.9
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019549
(v1.0)
A_51_P100787SkiipAK00921866354
11P0.5370.104P
0019549
(v1.0)
A_52_P662695SkiipNM_02550766354
11P0.8620.377P
Proteome N/A