DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019559
GeneSnx18
SynonymsSnag1
Desc.sorting nexin 18
LocusNM_130796 chr13:114382387-114408772(-)
DB links


Entrez 170625
MGI 2137642
Ensembl ENSMUSG00000042364
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
  •   1 Terms
      extrinsic to internal side of plasma membrane (GO:0031234)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020136
(v2.0)
Snx18NM_130796170625
13.699844.631129.830315.925515.057320.275712.663730.341614.933814.7131
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019559
(v1.0)
Snx18170625
Maternal RNA0.94779
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020136
(v2.0)
Snx18170625
893/4610.4403470/461-0.0881217/4612.4831700/4611.9281181/4610.7041180/4610.7553
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020136
(v2.0)
Snx18170625
561/1911.0377260/1910.3272127/1912.9348427/1912.476489/1910.9411647/1911.1567
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020136
(v2.0)
Snx18170625
103.502121248.82
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020136
(v2.0)
Snx18170625
17.175711514.94
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019559
(v1.0)
Snx18NM_130796170625
46.392820.687311.87710.4429.0052
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019559
(v1.0)
Snx18FR080206,NM_130796170625
62.642124.203614.920214.512412.1417
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
48.5085.0101622.5703
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
47.348620.479622.4714
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
22.149325.0638
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
48.53624.9415424.6459
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
10.996310.082210.2979
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
11.5811.8321
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019559
(v1.0)
Snx18NM_130796170625
43.062823.2284
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019559
(v1.0)
Snx18NM_130796170625
23.754230.7113
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019559
(v1.0)
20549L0703E01-3Snag1170625
NAP039443-1TC9095103.15593.00012.90333.04713.21043.0833.0746
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019559
(v1.0)
1416359_atMm.33721Snx18NM_130796.4170625
385.4703.625222.875128.475226.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019559
(v1.0)
A_51_P457800Snag1NM_130796170625
11P1.1950.325P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019559
(v1.0)
Snx18170625
24158.51