DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019579

Gene

Snx9

Synonyms

SDP1
SH3PX1

Description

sorting nexin 9

Locus

NM_025664 UCSC: chr17:5841380-5930711(+) OLP: chr17:5841380-5930711(+)

DB links

Entrez 66616
MGI 1913866

Feature

protein-coding

GO_BP

9 Terms

GO_MF

6 Terms

GO_CC

10 Terms

KEGG

see DBTMEE:2020156 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	155.123	172.435	43.0338	8.88962	26.9095

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	162.195	12.5468	188.131

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	158.318	170.704	180.098

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	162.289	12.3749	197.526

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	39.8426	8.58328	13.1915

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019579 (v1.0)	Snx9	NM_025664	66616	34.5971	22.2301

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019579 (v1.0)	Snx9	NM_025664	66616	26.3663	26.9435

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019579 (v1.0)	1901	C0268A04-3	Mm.89515	Snx9	66616	U037368	NAP005595-001	Snx9;	TC793792	Q91VH2	U,F,2	3.1701	3.2524	3.0436	2.9018	2.4907	2.6185	2.8555
0019579 (v1.0)	4780	G0105D08-3	Mm.89515	Snx9	66616	U037368	NAP005595-001	Snx9;	TC793792	Q91VH2	U,F,2	4.7274	4.6418	3.8719	3.6137	3.0124	2.9778	3.4238

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019579 (v1.0)	1423076_at	Mm.89515	Snx9	NM_025664.5	66616	788.225	1260	926.325	0	191.825

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019579 (v1.0)	A_51_P371323	Snx9	NM_025664	66616	1	1	P	1.58	0.171	P
0019579 (v1.0)	A_52_P131418	Snx9	AK004449	66616	1	1	P	0.681	0.162	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0019579 (v1.0)	Snx9	66616	1	7	1	1	8	1