DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019590
GeneSod1
SynonymsCu(2+)-Zn2+ superoxide dismutase
Cu/Zn-SOD
CuZnSOD
Ipo-1
Ipo1
Sod-1
SODC
Desc.superoxide dismutase 1, soluble
LocusNM_011434 chr16:90220987-90226569(+)
DB links


Entrez 20655
MGI 98351
Ensembl ENSMUSG00000022982
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020167
(v2.0)
Sod1NM_01143420655
886.058657.858168.78277.6632126.1941695.71233.538194.003139.0321922.37
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019590
(v1.0)
Sod120655
Maternal RNA0.99922
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020167
(v2.0)
Sod120655
701/3990.2995497/3990.2002421/3993.63871414/3993.148657/399-0.7395414/399-0.5445
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020167
(v2.0)
Sod120655
345/1370.8151240/1370.6887341/1374.79841023/1374.20725/137-0.383147/137-0.4934
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020167
(v2.0)
Sod120655
54.690314338.24
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020167
(v2.0)
Sod120655
9.52369510.02
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019590
(v1.0)
Sod1NM_01143420655
683.756117.05357.874687.4746165.945
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019590
(v1.0)
Sod1NM_01143420655
456.99170.83537.947559.5161107.077
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
714.93324.04127.707
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
697.842115.877144.066
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
102.377103.728
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
715.345319.602158.007
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
53.582984.460396.1184
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
42.38250.2834
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019590
(v1.0)
Sod1NM_01143420655
4653.84411.574
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019590
(v1.0)
Sod1NM_01143420655
183.97191.0446
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019590
(v1.0)
11976H3130B11-3Mm.5274Sod120655
U017354NAP097171-001Sod1;TC841818,TC841816P08228U,F,23.89774.08524.36964.48373.66334.17854.158
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019590
(v1.0)
1451124_atMm.276325Sod1NM_011434.120655
1530.41523.85517.95435.751250.525
0019590
(v1.0)
1435304_atMm.276325Sod1NM_011434.120655
62.5565.1107.8048.45
0019590
(v1.0)
1459976_s_atMm.276325Sod1NM_011434.120655
9228.7754436.81738.352348.859143.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019590
(v1.0)
A_51_P367381Sod1NM_01143420655
11P0.6580.149P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019590
(v1.0)
Sod120655
292337133203147