DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0019591

Gene

Sod2

Synonyms

manganese SOD
manganese superoxide dismutase
MnSOD
Sod-2

Description

superoxide dismutase 2, mitochondrial

Locus

NM_013671 UCSC: chr17:13200705-13210985(+) OLP: chr17:13200705-13210985(+)

DB links

Entrez 20656
MGI 98352
Ensembl ENSMUSG00000006818

Feature

protein-coding

GO_BP

49 Terms

GO_MF

7 Terms

GO_CC

4 Terms

KEGG

2 Terms

see DBTMEE:2020168 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	8.96235	6.59958	21.8954	26.2152	15.8784

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	9.37096	13.678	7.20029

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	9.14698	6.53332	8.05752

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	9.37641	13.4907	8.83721

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	20.2717	25.3118	26.1597

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0019591 (v1.0)	Sod2	NM_013671	20656	2.823	9.35865

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0019591 (v1.0)	Sod2	NM_013671	20656	16.5077	11.2473

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0019591 (v1.0)	2691	C0352F05-3	Mm.2597	Sod2	20656	U017505	NAP097815-001	Sod2;	TC919199	P09671	U,F,2	3.871	3.9151	3.7771	4.097	3.8062	4.1669	4.343
0019591 (v1.0)	3472	C0665F12-3	Mm.2597	Sod2	20656	U043559	NAP019434-001		TC843349	P09671	U,F,2	2.4745	2.5201	2.656	2.9991	2.7261	2.9726	2.879

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0019591 (v1.0)	1448610_a_at	Mm.290876	Sod2	NM_013671.3	20656	639	713.8	1573.85	1812.32	3758.3
0019591 (v1.0)	1454976_at	Mm.290876	Sod2	NM_013671.3	20656	0	0	0	795.825	913.475

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0019591 (v1.0)	A_51_P172573	Sod2	NM_013671	20656	1	1	P	0.916	0.541	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0019591 (v1.0)	Sod2	20656	2	4	4	8	9	8