DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019591
GeneSod2
Synonymsmanganese SOD
manganese superoxide dismutase
MnSOD
Sod-2
Desc.superoxide dismutase 2, mitochondrial
LocusNM_013671 chr17:13200705-13210985(+)
DB links


Entrez 20656
MGI 98352
Ensembl ENSMUSG00000006818
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020168
(v2.0)
Sod2NM_01367120656
37.40128.621929.5572129.425737.748136.687422.468410.857137.837433.289
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019591
(v1.0)
Sod220656
MGA0.96638
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020168
(v2.0)
Sod220656
493/3020.1936338/3020.0461185/3022.845403/3021.739123/302-1.6154180/302-1.3386
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020168
(v2.0)
Sod220656
271/1380.458147/138-0.0249181/1383.8787398/1382.83696/138-2.286355/138-1.8977
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020168
(v2.0)
Sod220656
43.34239744.68
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020168
(v2.0)
Sod220656
9.96776216.08
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019591
(v1.0)
Sod2NM_01367120656
8.962356.5995821.895426.215215.8784
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019591
(v1.0)
Sod2NM_01367120656
125.38769.6925170.197201.652170.661
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
9.3709613.6787.20029
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
9.146986.533328.05752
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
69.579597.553
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
9.3764113.49078.83721
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
20.271725.311826.1597
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
154.097173.239
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019591
(v1.0)
Sod2NM_01367120656
2.8239.35865
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019591
(v1.0)
Sod2NM_01367120656
16.507711.2473
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019591
(v1.0)
2691C0352F05-3Mm.2597Sod220656
U017505NAP097815-001Sod2;TC919199P09671U,F,23.8713.91513.77714.0973.80624.16694.343
0019591
(v1.0)
3472C0665F12-3Mm.2597Sod220656
U043559NAP019434-001TC843349P09671U,F,22.47452.52012.6562.99912.72612.97262.879
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019591
(v1.0)
1448610_a_atMm.290876Sod2NM_013671.320656
639713.81573.851812.3253758.3
0019591
(v1.0)
1454976_atMm.290876Sod2NM_013671.320656
000795.825913.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019591
(v1.0)
A_51_P172573Sod2NM_01367120656
11P0.9160.541P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019591
(v1.0)
Sod220656
244898