DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019641
GeneSp3
Synonyms
Desc.trans-acting transcription factor 3
LocusNM_001018042 chr2:72774490-72818503(-)
NM_001098425 chr2:72774490-72817338(-)
DB links


Entrez 20687
MGI 1277166
Ensembl ENSMUSG00000027109
Vega OTTMUSG00000013207
Featureprotein-coding
GO(BP)
GO(MF)
  •   11 Terms
      RNA polymerase II core promoter sequence-specific DNA binding (GO:0000979)
      core promoter proximal region sequence-specific DNA binding (GO:0000987)
      RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription (GO:0001078)
      nucleic acid binding (GO:0003676)
      DNA binding (GO:0003677)
      chromatin binding (GO:0003682)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      protein binding (GO:0005515)
      zinc ion binding (GO:0008270)
      metal ion binding (GO:0046872)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020219
(v2.0)
Sp3NM_001018042,NM_00109842520687
11.31414.022116.259248.311328.458538.694824.582815.704232.348330.2825
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019641
(v1.0)
Sp320687
2-Cell Transient0.9945
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020219
(v2.0)
Sp320687
800/3250.7849469/3250.4118215/3252.9588543/3252.063316/325-2.2174117/325-2.0592
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020219
(v2.0)
Sp320687
506/1131.6413222/1130.8524197/1134.2631445/1133.28026/113-2.007265/113-1.3766
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020219
(v2.0)
Sp320687
43.494914330.42
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020219
(v2.0)
Sp320687
7.1747987.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
14.570911.152435.926419.705217.3896
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
17.87212.4640.666822.931820.249
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
15.23524.137812.1675
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
14.871111.040411.628
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
25.002520.5757
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
15.24414.0811212.7532
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
33.262219.026122.2844
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
23.164527.379
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
4.7457420.2364
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019641
(v1.0)
Sp3NM_001018042,NM_00109842520687
0.6743410.946401
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019641
(v1.0)
432C0106E10-3Mm.28513Sp320687
U022740NAP096785-001Sp3;TC898608,TC898607O70494U,F,22.29132.61962.74732.9092.8852.8213.1754
0019641
(v1.0)
9559H3083C05-3Mm.28513Sp320687
U022740NAP096785-001Sp3;TC898608,TC898607O70494U,F,22.30162.45322.9332.96342.48082.38592.4675
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019641
(v1.0)
1431804_a_atMm.124328Sp3NM_001018042.3,NM_001098425.120687
42.23384.87531.2526.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019641
(v1.0)
A_51_P112662Sp3NM_00101804220687
11P0.8090.316P
0019641
(v1.0)
A_52_P522264Sp3NM_01145020687
11P0.8740.443P
Proteome N/A