DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019668
GeneSpast
SynonymsSpg4
Desc.spastin
LocusNM_016962 chr17:74738327-74790453(+)
NM_001162870 chr17:74738327-74790453(+)
DB links


Entrez 50850
MGI 1858896
Ensembl ENSMUSG00000024068
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020248
(v2.0)
SpastNM_001162870,NM_01696250850
7.1740273.486100.64261.64429.57445.6846710.659268.276329.85975.21672
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019668
(v1.0)
Spast50850
Maternal RNA0.96142
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020248
(v2.0)
Spast50850
618/3940.1363435/3940.0266155/3942.2207308/3940.971545/394-1.0559274/394-1.1191
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020248
(v2.0)
Spast50850
343/1710.489204/1710.1376149/1713.3131283/1712.04217/171-2.394872/171-1.8256
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020248
(v2.0)
Spast50850
57.440314639.34
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020248
(v2.0)
Spast50850
11.16849711.51
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
76.368669.407445.883920.48457.5183
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
79.85042.6236675.725
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
77.941968.710550.5666
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
79.89682.5877255.4597
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
42.481419.778620.7109
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
52.771274.2637
Illumina_Oo-2C_FPKM_gene_guided N/A
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019668
(v1.0)
SpastNM_001162870,NM_01696250850
11.797422.6764
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019668
(v1.0)
18825L0228G10-3Mm.19804Spg450850
U018222NAP007146-001Spg4;TC941677Q9CVK0U,F,24.1844.29663.24923.30023.22793.13133.2652
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019668
(v1.0)
1460400_atMm.19804SpastNM_001162870.1,NM_016962.250850
376.3176.4687.075278.6133.825
0019668
(v1.0)
1454794_atMm.19804SpastNM_001162870.1,NM_016962.250850
969.21455.95803.25133.425180.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019668
(v1.0)
A_51_P348652Spg4NM_01696250850
11P1.5850.136P
0019668
(v1.0)
A_52_P559061Spg4AK12928250850
11P0.6690.156P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019668
(v1.0)
Spast50850
451471