DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019824
GeneSptlc2
SynonymsLCB2
Desc.serine palmitoyltransferase, long chain base subunit 2
LocusNM_011479 chr12:88648839-88729180(-)
DB links


Entrez 20773
MGI 108074
Ensembl ENSMUSG00000021036
Vega OTTMUSG00000035626
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020410
(v2.0)
Sptlc2NM_01147920773
16.62596.917436.8484828.424827.63167.3165314.01497.3584627.28576.67761
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019824
(v1.0)
Sptlc220773
Major ZGA0.99901
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020410
(v2.0)
Sptlc220773
614/3970.116410/397-0.069582/3971.2997213/3970.4306114/3970.2552604/3970.006
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020410
(v2.0)
Sptlc220773
330/1850.3206222/1850.146178/1852.2818203/1851.452828/185-0.6477159/185-0.8119
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020410
(v2.0)
Sptlc220773
29.285811725.03
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020410
(v2.0)
Sptlc220773
6.2904936.76
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
7.187774.7327221.173319.18049.91795
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
7.515476.080255.16351
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
7.335854.68525.46728
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
7.519845.996975.99633
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
19.603218.519518.8053
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019824
(v1.0)
Sptlc2NM_01147920773
11.157329.6939
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019824
(v1.0)
Sptlc2NM_01147920773
2.446842.35768
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019824
(v1.0)
3082C0508H08-3Mm.565Sptlc220773
U034212NAP094639-001Sptlc2;TC923272,TC869668P97363U,F,22.88393.10143.45133.76632.88773.28913.2901
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019824
(v1.0)
1460243_atMm.565Sptlc2NM_011479.320773
521.5218.825399.425371.275584.225
0019824
(v1.0)
1435937_atMm.565Sptlc2NM_011479.320773
109.250115.90426.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0019824
(v1.0)
A_52_P200244Sptlc2NM_01147920773
11P0.8770.415P
0019824
(v1.0)
A_52_P59916Sptlc2NM_01147920773
11P1.7650.143P
Proteome N/A