DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019858
GeneSrp54b
Synonyms
Desc.signal recognition particle 54B
LocusNM_001100109 chr12:56256091-56290200(+)
DB links


Entrez 665155
MGI 3714357
Ensembl ENSMUSG00000079108
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020444
(v2.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
3.4926938.50422.55286.885845.815855.687653.3920721.67655.928845.59165
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019858
(v1.0)
Srp54bMaternal RNA0.96462
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020444
(v2.0)
Srp54b665155
0/000/000/002/01.5850/000/00
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020444
(v2.0)
Srp54b665155
0/000/000/002/01.5850/000/00
SPR_Methy_Kobayashi_+-5KfromTSS N/A
SPR_Methy_Kobayashi_+-2KfromTSS N/A
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
40.02615.71745.142434.021412.38205
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
41.85091.2773117.148
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
40.850615.559616.0772
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
41.87521.2598217.6329
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
4.761093.882834.10567
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
15.18572.63213
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019858
(v1.0)
Srp54bNM_001100109,NM_001100110,NM_011899665155
2.296831.96157
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0019858
(v1.0)
1425665_a_atMm.482525~Mm.471968~Mm.12848Srp54c~Srp54a~Srp54bNM_001100110.1~NM_011899.4~NM_001100109.1100101806
24067
665155
1261.55797.775564.575396.425635.825
0019858
(v1.0)
1416153_atMm.482525~Mm.471968~Mm.12848Srp54c~Srp54a~Srp54bNM_001100110.1~NM_011899.4~NM_001100109.1100101806
24067
665155
3585.1252671.351673.51228.6751875.35
0019858
(v1.0)
1416154_atMm.471968~Mm.12848Srp54a~Srp54bNM_011899.4~NM_001100109.124067
665155
93.075111.97572.600
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019858
(v1.0)
Srp54b665155
320320