DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0019910
GeneSssca1
Synonyms
Desc.Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
LocusNM_020491 chr19:5730306-5731721(-)
DB links


Entrez 56390
MGI 1913482
Ensembl ENSMUSG00000079478
Vega OTTMUSG00000035065
Featureprotein-coding
GO(BP)
GO(MF)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020498
(v2.0)
Sssca1NM_02049156390
29.01612.03535.7986273.554291.747936.398518.65049.2156287.14855.7985
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0019910
(v1.0)
Sssca156390
Major ZGA0.98092
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020498
(v2.0)
Sssca156390
827/603-0.057407/603-0.6819592/6033.54821577/6032.7131131/603-0.14381118/6030.2909
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020498
(v2.0)
Sssca156390
323/227-0.004144/227-0.7683160/2273.0303474/2272.380620/227-1.4027170/227-1.01
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020498
(v2.0)
Sssca156390
86.299822238.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020498
(v2.0)
Sssca156390
36.84039937.21
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
12.76594.1205955.979465.042913.5987
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
15.49984.6176367.182693.639117.243
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
13.347910.85094.49565
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
13.02894.079216.97032
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
4.6885515.9479
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
13.355710.70237.64481
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
51.828262.801561.5193
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
161.7164.83
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0019910
(v1.0)
Sssca1NM_02049156390
0.73135268.6163
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0019910
(v1.0)
Sssca1NM_02049156390
00.443157
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0019910
(v1.0)
11389H3114E04-3Sssca156390
U019037NAP001321-001Mtvr2;Sssca1;TC858844Q9CZE12.76472.87572.93543.0632.99233.07552.976
MOE430 N/A
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0019910
(v1.0)
Sssca156390
010020