DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020081
GeneSub1
SynonymsP15
Pc4
Rpo2tc1
Desc.SUB1 homolog (S. cerevisiae)
LocusNM_011294 chr15:11911094-11925762(-)
DB links


Entrez 20024
MGI 104811
Ensembl ENSMUSG00000022205
Vega OTTMUSG00000023586
Featureprotein-coding
GO(BP)
  •   3 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020674
(v2.0)
Sub1NM_01129420024
20.917451.232546.600725.345126.252447.342313.378927.313823.351252.7095
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020081
(v1.0)
Sub120024
Maternal RNA0.99725
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020674
(v2.0)
Sub120024
668/3270.5164547/3270.6245637/3274.51282275/3274.119443/327-0.8542301/327-0.716
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020674
(v2.0)
Sub120024
384/1440.8976290/1440.8892575/1445.48431805/1444.954912/144-1.452874/144-1.5406
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020674
(v2.0)
Sub120024
49.81512041.51
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020674
(v2.0)
Sub120024
13.02148016.28
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020081
(v1.0)
Sub1NM_01129420024
53.227832.248418.865918.25219.46107
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020081
(v1.0)
Sub1FR209401,NM_01129420024
630.095508.338100.73573.5360.4279
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020081
(v1.0)
Sub1NM_01129420024
55.65467.6497135.1837
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020081
(v1.0)
Sub1NM_01129420024
54.324431.924620.2047
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020081
(v1.0)
Sub1FR209401,NM_01129420024
78.724153.4822
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020081
(v1.0)
Sub1NM_01129420024
55.68697.5449322.1598
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020081
(v1.0)
Sub1NM_01129420024
17.466917.623116.0873
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020081
(v1.0)
Sub1FR209401,NM_01129420024
127.48697.0684
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020081
(v1.0)
Sub1NM_01129420024
70.429379.7303
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020081
(v1.0)
Sub1NM_01129420024
84.6041154.45
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020081
(v1.0)
1472C0216G07-3Mm.41746Rpo2tc120024
U036014NAP005104-001Rpo2tc1;TC929871P11031U,F,23.07173.0542.68222.75382.79482.99933.1994
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020081
(v1.0)
1422692_atMm.41746Sub1NM_011294.320024
0000126.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020081
(v1.0)
A_52_P340607Rpo2tc1NM_01129420024
11P0.5690.112P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0020081
(v1.0)
Sub120024
69313315