DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020087
GeneSuds3
Synonyms
Desc.suppressor of defective silencing 3 homolog (S. cerevisiae)
LocusNM_178622 chr5:117541689-117566002(-)
NM_001122666 chr5:117541689-117566002(-)
DB links


Entrez 71954
MGI 1919204
Ensembl ENSMUSG00000066900
Featureprotein-coding
GO(BP)
  •   5 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      chromatin modification (GO:0016568)
      negative regulation of transcription, DNA-dependent (GO:0045892)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020680
(v2.0)
Suds3NM_001122666,NM_17862271954
42.342944.924462.50971.535475.509121.314529.619950.21787.815126.9359
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020087
(v1.0)
Suds371954
Major ZGA0.93679
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020680
(v2.0)
Suds371954
962/4410.6113577/4410.2711003/4414.74882427/4413.78431/441-1.7404255/441-1.3844
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020680
(v2.0)
Suds371954
459/1770.8583302/1770.6516585/1775.23261566/1774.45719/177-2.121486/177-1.6236
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020680
(v2.0)
Suds371954
69.731925627.24
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020680
(v2.0)
Suds371954
10.546310510.04
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
46.760443.445553.081552.185521.083
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020087
(v1.0)
Suds3FR207858,NM_001122666,NM_17862271954
603.609570.291440.768633.114586.338
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
48.892315.500547.4
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
47.723843.009237.2679
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
394.363225.81
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
48.920715.288240.8742
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
49.145250.387261.0014
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
73.50190.6183
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
25.723511.845
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020087
(v1.0)
Suds3NM_001122666,NM_17862271954
9.3951610.8122
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020087
(v1.0)
8352H3064C01-32400003N08Rik71954
U026649NAP003653-001TC941579U3.68233.92654.2934.25493.86214.02033.9649
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020087
(v1.0)
1427896_atMm.34456Suds3NM_178622.4,NM_001122666.171954
173.3750158.625235.55142.75
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020087
(v1.0)
A_52_P5531712400003N08RikNM_17862271954
11P1.6680.123P
0020087
(v1.0)
A_52_P5798762400003N08RikNM_17862271954
11P3.4680.0522P
Proteome N/A