DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020190
GeneSyne2
SynonymsD12Ertd777e
Nesp2g
nesprin-2
syne-2
Desc.spectrin repeat containing, nuclear envelope 2
LocusNM_001005510 chr12:76919305-77211915(+)
DB links


Entrez 319565
MGI 2449316
Ensembl ENSMUSG00000063450
Vega OTTMUSG00000033019
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020787
(v2.0)
Syne2NM_001005510,NR_039560319565
5.4979328.551732.259913.247514.34990.8330125.7230530.085113.91820.864466
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020190
(v1.0)
Syne2319565
Maternal RNA0.93433
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020787
(v2.0)
Syne2319565
816/4810.2492609/4810.2238241/4812.5741789/4812.0396521/4812.16342340/4811.681
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020787
(v2.0)
Syne2319565
438/1710.8404308/1710.7294229/1713.9298730/1713.4061306/1712.86731232/1712.2429
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020787
(v2.0)
Syne2319565
62.663118334.24
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020787
(v2.0)
Syne2319565
5.23341064.94
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
29.679922.34089.853769.956253.90549
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020190
(v1.0)
Syne2FR226899,FR343632,NM_001005510319565
825.46556.748324.364279.05598.2552
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
31.0332.0106524.3743
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
30.291322.116522.2567
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020190
(v1.0)
Syne2FR226899,FR343632,NM_001005510319565
855.671927.206
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
31.05111.9831124.4104
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
9.123049.613169.63653
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020190
(v1.0)
Syne2FR226899,FR343632,NM_001005510319565
405.098682.407
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020190
(v1.0)
Syne2NM_001005510319565
45.98568.97393
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020190
(v1.0)
Syne2NM_001005510319565
3.17775.73987
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020190
(v1.0)
1427982_s_atMm.26652Syne2NM_001005510.2319565
189.2581.42589.4573.550
0020190
(v1.0)
1438585_atMm.26652Syne2NM_001005510.2319565
178.025318.775140.32500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020190
(v1.0)
A_51_P210143Syne2XM_619002319565
11P0.6170.13P
0020190
(v1.0)
A_51_P224872Syne2BC082586319565
11P0.9470.684P
0020190
(v1.0)
A_52_P315022Syne2XM_619002319565
11P0.5890.172P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0020190
(v1.0)
Syne2319565
010010