DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020279
GeneTaf1d
SynonymsJosd3
TAF(I)41
TAFI41
Desc.TATA box binding protein (Tbp)-associated factor, RNA polymerase I, D
LocusNM_027261 chr9:15110658-15116549(+)
NM_029248 chr9:15110658-15116548(+)
NR_028401 chr9:15110658-15121441(+)
DB links


Entrez 75316
MGI 1922566
Ensembl ENSMUSG00000031939
Featureprotein-coding
GO(BP)
  •   2 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020877
(v2.0)
Taf1dNM_027261,NM_029248,NR_02840175316
6.2464715.483517.7665106.183204.54754.645436.927612.4329202.43665.4064
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020279
(v1.0)
Taf1d75316
MGA0.99787
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020877
(v2.0)
Taf1d75316
590/3870.0953416/387-0.0119186/3872.5072534/3871.789123/387-1.9689112/387-2.3725
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020877
(v2.0)
Taf1d75316
292/1910.0991180/191-0.2006178/1913.4186488/1912.66879/191-2.228838/191-2.88
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020877
(v2.0)
Taf1d75316
70.443413153.77
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020877
(v2.0)
Taf1d75316
30.33418934.08
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
15.514211.583373.9337133.33325.3736
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020279
(v1.0)
Taf1dFR092672,FR144066,FR160685,FR176293,FR213407,FR264826,FR390401,NM_027261,NM_029248,NR_02840175316
5115.220407.342801.686672.414980.3
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
16.22162.1978912.6377
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
15.833911.4678.96463
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020279
(v1.0)
Taf1dFR092672,FR144066,FR160685,FR176293,FR213407,FR264826,FR390401,NM_027261,NM_029248,NR_02840175316
20178.625972.1
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
16.2312.167799.8321
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
68.4511128.738131.472
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020279
(v1.0)
Taf1dFR092672,FR144066,FR160685,FR176293,FR264826,NM_027261,NM_029248,NR_02840175316
85624.354311.3
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
11.5848131.963
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020279
(v1.0)
Taf1dNM_027261,NM_02924875316
6.3111915.0824
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020279
(v1.0)
10826H3104B08-3Mm.2183174930553M18Rik75316
2.2022.45262.68982.79512.38542.45592.2724
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020279
(v1.0)
1452635_x_atMm.354115Taf1dNM_027261.3,NM_029248.275316
116.9250906.025770.85274.65
0020279
(v1.0)
1430147_a_atMm.354115Taf1dNM_027261.3,NM_029248.275316
00112.075100.22538.025
0020279
(v1.0)
1430271_x_atMm.354115Taf1dNM_027261.3,NM_029248.275316
00247.9169.444.425
0020279
(v1.0)
1436558_atMm.354115Taf1dNM_027261.3,NM_029248.275316
0071.225105.240.375
0020279
(v1.0)
1457292_atMm.354115Taf1dNM_027261.3,NM_029248.275316
00657.5251527.3251094.975
0020279
(v1.0)
1442289_atMm.354115Taf1dNM_027261.3,NM_029248.275316
000398.3750
Agilent44K N/A
Proteome N/A