DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020281
GeneTaf3
SynonymsmTAFII140
Desc.TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor
LocusNM_027748 chr2:9836179-9970236(-)
DB links


Entrez 209361
MGI 2388097
Ensembl ENSMUSG00000025782
Vega OTTMUSG00000011183
Featureprotein-coding
GO(BP)
  •   7 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      transcription from RNA polymerase II promoter (GO:0006366)
      negative regulation of sequence-specific DNA binding transcription factor activity (GO:0043433)
      maintenance of protein location in nucleus (GO:0051457)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Basal transcription factors (mmu03022)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020879
(v2.0)
Taf3NM_027748209361
3.4240146.029451.869131.58611.46522.91264.7172380.078115.3323.01449
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020281
(v1.0)
Taf3209361
Maternal RNA0.96379
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020879
(v2.0)
Taf3209361
717/4320.2177462/432-0.0193167/4322.1985401/4321.219135/432-1.541224/432-1.5405
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020879
(v2.0)
Taf3209361
377/1750.5916216/1750.1865158/1753.366379/1752.429312/175-1.7269121/175-1.122
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020879
(v2.0)
Taf3209361
44.902714431.18
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020879
(v2.0)
Taf3209361
11.724910411.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020281
(v1.0)
Taf3NM_027748209361
47.85135.680923.43617.935143.30372
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020281
(v1.0)
Taf3NM_027748209361
57.760338.926826.64979.24733.8036
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
50.03261.252238.9286
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
48.836735.322659.232
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
39.538568.115
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
50.06161.2350564.9636
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
21.69827.661710.6507
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
9.1475912.5461
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020281
(v1.0)
Taf3NM_027748209361
132.048116.989
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020281
(v1.0)
Taf3NM_027748209361
47.612149.3913
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020281
(v1.0)
5935H3013B01-3Mm.86343Taf3209361
U022280NAP121079-001TAF140;TC926457Q9CUA0U,F,23.3493.32092.93412.95412.50542.61752.492
0020281
(v1.0)
14229J0425E10-3Mm.86343Taf3209361
3.29653.00322.73272.91532.43972.61762.4878
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020281
(v1.0)
1440187_atMm.86343Taf3NM_027748.3209361
1169836.6251048.45100.2250
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020281
(v1.0)
A_51_P169617Taf3AK084574209361
11P0.1240.0309P
0020281
(v1.0)
A_52_P132028Taf3XM_129997209361
11P0.7170.215P
Proteome N/A