DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020291
GeneTaf9
Synonyms32kDa
Taf2g
Desc.TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor
LocusNM_027139 chr13:101421298-101426015(+)
NM_027592 chr13:101421298-101436368(+)
NM_001015889 chr13:101421562-101426015(+)
DB links


Entrez 108143
MGI 1888697
Ensembl ENSMUSG00000052293
Ensembl ENSMUSG00000078941
Featureprotein-coding
GO(BP)
  •   11 Terms
      transcription, DNA-dependent (GO:0006351)
      DNA-dependent transcription, initiation (GO:0006352)
      regulation of transcription, DNA-dependent (GO:0006355)
      phosphorylation (GO:0016310)
      positive regulation of cell growth (GO:0030307)
      negative regulation of proteasomal ubiquitin-dependent protein catabolic process (GO:0032435)
      negative regulation of apoptotic process (GO:0043066)
      histone H3 acetylation (GO:0043966)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of response to cytokine stimulus (GO:0060760)
      response to interleukin-1 (GO:0070555)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
      Basal transcription factors (mmu03022)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2020889
(v2.0)
Taf9NM_001015889,NM_027139,NM_027592108143
93.278174.094222.448563.319580.505127.98887.5611190.114433.573148.336
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020291
(v1.0)
Taf9108143
2-Cell Transient0.9989
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020889
(v2.0)
Taf9108143
583/2950.4686432/2950.4328472/2954.2241054/2953.15752/295-4.58268/295-2.6896
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2020889
(v2.0)
Taf9108143
365/1380.8856245/1380.7079459/1385.21641034/1384.21211/138-4.093642/138-2.2748
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020889
(v2.0)
Taf9108143
58.599612447.26
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2020889
(v2.0)
Taf9108143
9.32957113.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
180.922153.104419.171402.49862.2849
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
46.7238.2495916.303667.93828.5838
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
189.1734.1364167.039
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
184.649151.566140.961
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
38.852327.8234
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
189.2833.6689154.601
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
388.087388.628299.777
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
685.389110.574
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
154.882258.428
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020291
(v1.0)
Taf9NM_001015889,NM_027139,NM_027592108143
187.437126.354
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020291
(v1.0)
6545H3026H12-3Mm.16976Taf9108143
U015190NAP098423-001Taf9;TC853837U,F,23.97944.14213.8564.00243.3763.42713.2794
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020291
(v1.0)
1422778_atMm.301148Taf9NM_001015889.2,NM_027139.5,NM_027592.2108143
1714.81578.3253493.21608.65694.375
0020291
(v1.0)
1438250_s_atMm.301148Taf9NM_001015889.2,NM_027139.5,NM_027592.2108143
2024.351592.43411.9752658.725908.225
0020291
(v1.0)
1451509_atMm.301148Taf9NM_001015889.2,NM_027139.5,NM_027592.2108143
00732.15989.775641.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020291
(v1.0)
A_51_P417313Taf9NM_027139108143
11P0.7170.188P
0020291
(v1.0)
A_51_P470029Taf9NM_027592108143
11P1.1120.488P
0020291
(v1.0)
A_52_P302977Taf9NM_027139108143
11P0.6380.142P
Proteome N/A