DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020472
GeneTcof1
Synonymstreacle
Desc.Treacher Collins Franceschetti syndrome 1, homolog
LocusNM_011552 chr18:60973410-61008618(-)
NM_001198984 chr18:60973410-61008618(-)
DB links


Entrez 21453
MGI 892003
Ensembl ENSMUSG00000024613
Vega OTTMUSG00000039736
Featureprotein-coding
GO(BP)
  •   2 Terms
      transport (GO:0006810)
      transcription of nuclear large rRNA transcript from RNA polymerase I promoter (GO:0042790)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ribosome biogenesis in eukaryotes (mmu03008)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021079
(v2.0)
Tcof1NM_001198984,NM_01155221453
5.7273526.072124.881239.066824.923521.671710.94426.686221.716920.7038
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020472
(v1.0)
Tcof121453
2-Cell Transient0.97894
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021079
(v2.0)
Tcof121453
556/482-0.3061353/482-0.5641116/4821.5227243/4820.341645/482-1.3439358/482-1.0253
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021079
(v2.0)
Tcof121453
211/171-0.2083134/171-0.464887/1712.5437190/1711.469810/171-1.935376/171-1.7492
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021079
(v2.0)
Tcof121453
99.255514767.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021079
(v2.0)
Tcof121453
23.47756735.04
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
27.115517.256829.058917.19137.62014
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020472
(v1.0)
Tcof1FR250151,NM_001198984,NM_01155221453
471.63211.456630.459328.376109.317
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
28.35182.0946618.8275
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
27.674117.083519.7698
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020472
(v1.0)
Tcof1FR250151,NM_001198984,NM_01155221453
156.802150.422
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
28.36822.0659721.6828
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
26.90416.598915.0867
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020472
(v1.0)
Tcof1FR250151,NM_001198984,NM_01155221453
334.259221.635
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
11.09716.1978
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020472
(v1.0)
Tcof1NM_001198984,NM_01155221453
11.968517.6377
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020472
(v1.0)
1423600_a_atMm.2215Tcof1NM_001198984.1,NM_011552.321453
22.57531.87540.52548.27534.225
0020472
(v1.0)
1424643_atMm.2215Tcof1NM_001198984.1,NM_011552.321453
0000107.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020472
(v1.0)
A_51_P160284Tcof1NM_01155221453
11P1.6050.132P
Proteome N/A