DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020504
GeneTdrd1
SynonymsMTR-1
Desc.tudor domain containing 1
LocusNM_001002238 chr19:56900699-56944502(+)
NM_001002240 chr19:56900765-56944502(+)
NM_031387 chr19:56900776-56944502(+)
NM_001002241 chr19:56905202-56944502(+)
DB links


Entrez 83561
MGI 1933218
Ensembl ENSMUSG00000025081
Vega OTTMUSG00000028359
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021110
(v2.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
0.574843118.642140.17912.58355.28280.2991560.00386961129.84210.25890.240396
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020504
(v1.0)
Tdrd183561
Maternal RNA0.98501
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021110
(v2.0)
Tdrd183561
856/4880.2974583/4880.1401524/4883.67111633/4883.0673296/4881.32911763/4881.252
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021110
(v2.0)
Tdrd183561
358/1910.3918220/1910.087344/1911.4266302/1911.9781137/1911.5578866/1911.5764
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021110
(v2.0)
Tdrd183561
91.237521542.44
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021110
(v2.0)
Tdrd183561
29.51287240.99
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
123.3197.34919.372033.668170.00297179
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020504
(v1.0)
Tdrd1FR113501,FR395122,NM_001002238,NM_001002240,NM_001002241,NM_03138783561
2490.692089.01160.06243.70490.0103917
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
128.9320.210236106.21
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
125.8596.371696.2189
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020504
(v1.0)
Tdrd1FR113501,FR395122,NM_001002238,NM_001002240,NM_001002241,NM_03138783561
1578.731172.6
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
129.0070.207357105.53
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
8.677043.541777.15903
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020504
(v1.0)
Tdrd1FR113501,FR395122,NM_001002238,NM_001002240,NM_001002241,NM_03138783561
51.283649.3578
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
190.04410.4365
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020504
(v1.0)
Tdrd1NM_001002238,NM_001002240,NM_001002241,NM_03138783561
4.201814.93545
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020504
(v1.0)
12669H3149E09-3Mm.103193U019604NAP049996-1Tdrd;Tdrd1;Q99MV12.36812.38992.42452.41692.18342.16582.195
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020504
(v1.0)
A_52_P48218Tdrd1NM_00100224183561
11P0.6250.134P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0020504
(v1.0)
Tdrd183561
120120