DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020796
GeneTmco1
SynonymsESTM39
Desc.transmembrane and coiled-coil domains 1
LocusNM_001039483 chr1:169238801-169264109(+)
DB links


Entrez 68944
MGI 1921173
Ensembl ENSMUSG00000052428
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021409
(v2.0)
Tmco1NM_00103948368944
14.03359.831156.616911.981913.04488.9108513.21094.5103211.845210.0046
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020796
(v1.0)
Tmco168944
Major ZGA0.91193
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021409
(v2.0)
Tmco168944
732/4060.3368466/4060.0825529/4063.94311377/4063.085462/406-0.645443/406-0.4721
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021409
(v2.0)
Tmco168944
400/1730.6932222/1730.2423520/1735.09381322/1734.245420/173-1.018894/173-1.4646
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021409
(v2.0)
Tmco168944
55.110811249.21
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021409
(v2.0)
Tmco168944
12.48846718.64
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
10.21794.558088.920769.029779.33048
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
33.967218.813518.909927.209849.1495
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
10.68385.13224.97296
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
10.42844.512313.34242
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
32.453638.9273
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
10.695.061913.66585
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
8.259238.71868.15927
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
75.158672.2809
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020796
(v1.0)
Tmco1NM_00103948368944
2.463245.44955
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020796
(v1.0)
Tmco1NM_00103948368944
6.299329.21966
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020796
(v1.0)
8268H3062H06-3Mm.290491190006A08Rik68944
U001055NAP095720-0011190006A08Rik;TC853192,TC853191Q9CT66U3.68943.46683.5253.90623.41943.60973.6047
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020796
(v1.0)
1423759_a_atMm.330045Tmco1NM_001039483.168944
507.85360.85415.975359.925659
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020796
(v1.0)
A_51_P172177Tmco1AK00450468944
11P0.870.395P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0020796
(v1.0)
Tmco168944
010010