DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0020988
GeneTmem39a
Synonyms
Desc.transmembrane protein 39a
LocusNM_001205286 chr16:38558811-38592275(+)
NM_026407 chr16:38562927-38592275(+)
NM_001205287 chr16:38562927-38592275(+)
DB links


Entrez 67846
MGI 1915096
Ensembl ENSMUSG00000002845
Vega OTTMUSG00000036539
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021607
(v2.0)
Tmem39aNM_001205286,NM_001205287,NM_02640767846
8.7588332.723732.660128.322523.66760.370122.975127.448219.643871.6357
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0020988
(v1.0)
Tmem39a67846
Maternal RNA0.94474
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021607
(v2.0)
Tmem39a67846
593/3680.1751380/368-0.0697201/3682.6889422/3681.5224215/3681.27291596/3681.5148
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021607
(v2.0)
Tmem39a67846
221/1470.0749143/147-0.15493/147-1.71312/147-2.1924127/1471.8178831/1471.8925
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021607
(v2.0)
Tmem39a67846
59.201712049.33
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021607
(v2.0)
Tmem39a67846
34.91043794.35
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
48.37231.409129.991522.773322.4736
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
108.53361.353159.094252.332852.4304
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
50.57744.2146134.268
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
49.368531.093728.6688
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
60.136642.6986
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
50.60684.1568831.443
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
27.767521.988518.9928
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
49.640747.508
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0020988
(v1.0)
Tmem39aNM_02640767846
64.626697.3173
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0020988
(v1.0)
Tmem39aNM_02640767846
39.413127.8083
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0020988
(v1.0)
14129J0412F03-3Mm.271342610033C09Rik67846
U017102NAP004859-0012610033C09Rik;TC837161,TC837160,TC837159Q9CYC3U,F,23.7183.48023.41823.45093.87773.57523.7591
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0020988
(v1.0)
1423316_atMm.310476Tmem39aNM_026407.267846
396.475507.075325.9113.925222.125
0020988
(v1.0)
1441490_atMm.310476Tmem39aNM_026407.267846
563.675582.375648.975525.3250
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0020988
(v1.0)
A_51_P415519Tmem39aNM_02640767846
11P1.440.17P
Proteome N/A