DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021190
GeneTop1
SynonymsTop-1
Desc.topoisomerase (DNA) I
LocusNM_009408 chr2:160471633-160548499(+)
DB links


Entrez 21969
MGI 98788
Ensembl ENSMUSG00000070544
Vega OTTMUSG00000001178
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021811
(v2.0)
Top1NM_00940821969
13.222260.92392.6433103.0475.722217.74469.6321268.241857.620318.6654
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021190
(v1.0)
Top121969
Major ZGA0.98678
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021811
(v2.0)
Top121969
741/3840.4346513/3840.3009203/3842.6436494/3841.6882115/3840.3152688/3840.2414
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021811
(v2.0)
Top121969
427/1610.8902248/1610.5044198/1613.8019453/1612.804540/1610.0476201/161-0.2773
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021811
(v2.0)
Top121969
36.632814425.44
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021811
(v2.0)
Top121969
10.52991169.08
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021190
(v1.0)
Top1NM_00940821969
63.312163.853776.618352.3866.79249
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021190
(v1.0)
Top1NM_00940821969
80.255776.9989117.68199.088517.9118
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021190
(v1.0)
Top1NM_00940821969
66.19864.8354869.6657
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021190
(v1.0)
Top1NM_00940821969
64.616463.212550.5274
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021190
(v1.0)
Top1NM_00940821969
1432.42945.716
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021190
(v1.0)
Top1NM_00940821969
66.2374.7692555.4167
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021190
(v1.0)
Top1NM_00940821969
70.936650.580739.933
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021190
(v1.0)
Top1NM_00940821969
161.378341.677
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021190
(v1.0)
Top1NM_00940821969
124.23287.372
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021190
(v1.0)
Top1NM_00940821969
87.3562161.419
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021190
(v1.0)
4097C0915E08-3Mm.218404U002764NAP033900-1Top1;TC820845Q04750U,F,23.58283.74544.07913.90713.60033.87793.6926
0021190
(v1.0)
8188H3061C03-3Mm.29663Top121969
U002764NAP099120-001Top1;TC847904Q04750U,F,24.24224.19083.59423.81053.49163.74943.3887
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021190
(v1.0)
1423474_atMm.217233Top1NM_009408.221969
1396.5752814.851813.751068.675523.35
0021190
(v1.0)
1438495_atMm.217233Top1NM_009408.221969
000237.850
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021190
(v1.0)
A_51_P276404Top1NM_00940821969
11P0.8980.475P
Proteome N/A