DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0021190

Gene

Top1

Synonyms

Top-1

Description

topoisomerase (DNA) I

Locus

NM_009408 UCSC: chr2:160471633-160548499(+) OLP: chr2:160471633-160548499(+)

DB links

Entrez 21969
MGI 98788
Ensembl ENSMUSG00000070544
Vega OTTMUSG00000001178

Feature

protein-coding

GO_BP

8 Terms

GO_MF

10 Terms

GO_CC

8 Terms

KEGG

see DBTMEE:2021811 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	63.3121	63.8537	76.6183	52.386	6.79249

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	66.1986	4.83548	69.6657

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	64.6164	63.2125	50.5274

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	66.237	4.76925	55.4167

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	70.9366	50.5807	39.933

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0021190 (v1.0)	Top1	NM_009408	21969	124.232	87.372

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0021190 (v1.0)	Top1	NM_009408	21969	87.3562	161.419

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0021190 (v1.0)	4097	C0915E08-3	Mm.218404			U002764	NAP033900-1	Top1;	TC820845	Q04750	U,F,2	3.5828	3.7454	4.0791	3.9071	3.6003	3.8779	3.6926
0021190 (v1.0)	8188	H3061C03-3	Mm.29663	Top1	21969	U002764	NAP099120-001	Top1;	TC847904	Q04750	U,F,2	4.2422	4.1908	3.5942	3.8105	3.4916	3.7494	3.3887

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0021190 (v1.0)	1423474_at	Mm.217233	Top1	NM_009408.2	21969	1396.57	2814.85	1813.75	1068.68	523.35
0021190 (v1.0)	1438495_at	Mm.217233	Top1	NM_009408.2	21969	0	0	0	237.85	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0021190 (v1.0)	A_51_P276404	Top1	NM_009408	21969	1	1	P	0.898	0.475	P

N/A