DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021196
GeneTopbp1
Synonyms
Desc.topoisomerase (DNA) II binding protein 1
LocusNM_176979 chr9:103207657-103252757(+)
DB links


Entrez 235559
MGI 1920018
Ensembl ENSMUSG00000032555
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021818
(v2.0)
Topbp1NM_176979235559
6.6039838.691539.098257.2947102.73628.092944.961729.701694.709625.8437
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021196
(v1.0)
Topbp1235559
MGA0.98806
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021818
(v2.0)
Topbp1235559
612/431-0.007423/431-0.1429117/4311.6921256/4310.57729/431-1.8007160/431-2.0187
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021818
(v2.0)
Topbp1235559
311/1530.5078207/1530.318110/1533.028241/1531.969213/153-1.43146/153-2.2958
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021818
(v2.0)
Topbp1235559
63.617812949.32
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021818
(v2.0)
Topbp1235559
15.81397920.02
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
40.21327.075642.658971.095431.7967
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
289.388190.008255.815418.189271.647
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
42.04642.4151429.5401
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
41.041426.803822.0348
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
410.048349.633
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
42.07082.3820724.167
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
39.495568.645465.4759
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
495.966531.188
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021196
(v1.0)
Topbp1NM_176979235559
14.76829.0174
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021196
(v1.0)
Topbp1NM_176979235559
0.2133010.28615
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021196
(v1.0)
17508K0635G09-3Mm.16872810429C13Rik235559
U010943NAP094205-001LOC235559TC914542Q91VX3U,F,23.48593.4973.55354.00543.81923.80863.8299
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021196
(v1.0)
1452241_atMm.259893Topbp1NM_176979.5235559
511.9227.35356.85488.575484.45
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021196
(v1.0)
Topbp1235559
010010