DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021197
GeneTopors
Synonyms
Desc.topoisomerase I binding, arginine/serine-rich
LocusNM_134097 chr4:40206639-40216874(-)
DB links


Entrez 106021
MGI 2146189
Ensembl ENSMUSG00000036822
Vega OTTMUSG00000006555
Featureprotein-coding
GO(BP)
  •   13 Terms
      ubiquitin-dependent protein catabolic process (GO:0006511)
      protein monoubiquitination (GO:0006513)
      apoptotic process (GO:0006915)
      response to DNA damage stimulus (GO:0006974)
      intrinsic apoptotic signaling pathway in response to DNA damage (GO:0008630)
      protein sumoylation (GO:0016925)
      protein localization to nucleus (GO:0034504)
      regulation of cell proliferation (GO:0042127)
      proteasomal ubiquitin-dependent protein catabolic process (GO:0043161)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of ubiquitin-protein ligase activity (GO:0051443)
      maintenance of protein location in nucleus (GO:0051457)
      protein K48-linked ubiquitination (GO:0070936)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021819
(v2.0)
ToporsNM_134097106021
13.154535.922434.487265.999658.952229.855921.796526.607864.744829.6171
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021197
(v1.0)
Topors106021
2-Cell Transient0.9462
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021819
(v2.0)
Topors106021
762/4430.2691523/4430.123787/4434.3932091/4433.56264/443-4.424996/443-2.7862
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021819
(v2.0)
Topors106021
395/1950.5034229/1950.1151596/1955.12821272/1954.01953/195-3.5849/195-2.5554
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021819
(v2.0)
Topors106021
51.450415932.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021819
(v2.0)
Topors106021
8.86851098.14
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021197
(v1.0)
ToporsNM_134097106021
37.328123.78149.087440.865615.3869
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021197
(v1.0)
ToporsNM_134097106021
44.880226.044755.869547.087618.3251
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
39.034.8107325.9456
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
38.097123.542219.7537
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
26.376127.2354
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
39.05274.7448421.6651
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
45.447339.457344.8071
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
46.57952.6849
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021197
(v1.0)
ToporsNM_134097106021
28.9818.2427
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021197
(v1.0)
ToporsNM_134097106021
7.6808310.5237
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021197
(v1.0)
1317C0198A05-3Mm.39006AW105885106021
U024955NAP097206-001AW105885;TC809813Q920L3U,F,23.05563.35043.42983.853.39463.65293.5695
0021197
(v1.0)
2480C0328E12-3Mm.39006AW105885106021
U024955NAP097206-001AW105885;TC809813Q920L3U,F,22.93122.92222.91352.92862.69342.99182.9575
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021197
(v1.0)
1448838_atMm.251548ToporsNM_134097.3106021
266.0750724.35292.3220.3
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021197
(v1.0)
A_51_P267346ToporsNM_134097106021
11P0.4790.125P
0021197
(v1.0)
A_52_P188338ToporsNM_134097106021
11P0.7010.175P
Proteome N/A