DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021225
GeneTpm3
Synonymsgamma-TM
hTM30nm
hTMnm
skalphaTM.2
Tm5NM
Tpm-5
Tpm5
Trop-5
Desc.tropomyosin 3, gamma
LocusNM_022314 chr3:89876573-89904824(+)
NM_001253740 chr3:89883443-89904824(+)
NM_001253738 chr3:89883443-89904824(+)
NM_001271764 chr3:89883443-89904824(+)
DB links


Entrez 59069
MGI 1890149
Ensembl ENSMUSG00000027940
Vega OTTMUSG00000029647
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021849
(v2.0)
Tpm3NM_001253738,NM_001253740,NM_001271764,NM_001293748,NM_001293749,NM_02231459069
83.459815.672632.5375135.206157.05799.09796.482531.2112141.25891.3328
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021225
(v1.0)
Tpm359069
Major ZGA0.9944
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021849
(v2.0)
Tpm359069
663/477-0.0377440/477-0.2322277/4772.7859959/4772.3327131/4770.19181066/4770.5598
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021849
(v2.0)
Tpm359069
267/212-0.1791157/212-0.546411/212-0.622270/212-0.263968/2120.4103556/2120.7888
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021849
(v2.0)
Tpm359069
69.69178186.04
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021849
(v2.0)
Tpm359069
30.11773294.12
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
18.087425.2244106.132117.44978.3707
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
7.714911.4011138.85259.961959.2123
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
18.91235.408527.5203
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
18.4624.971126.2881
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
1.160343.47121
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
18.92334.923628.8319
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
98.2617113.402108.01
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
59.312163.8745
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021225
(v1.0)
Tpm3NM_02231459069
36.763247.2289
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021225
(v1.0)
Tpm3NM_02231459069
9.2331612.8534
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021225
(v1.0)
6298H3022F07-3Tpm359069
2.94442.85593.04863.22673.1163.37953.5204
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021225
(v1.0)
1427260_a_atMm.240839Tpm3NM_022314.259069
447.875713.71378.5751885.352635.675
0021225
(v1.0)
1436958_x_atMm.240839Tpm3NM_022314.259069
110.1176.75976.7751635.9252527.3
0021225
(v1.0)
1427567_a_atMm.240839Tpm3NM_022314.259069
00115.275121.675223.85
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021225
(v1.0)
A_52_P661033Tpm3NM_02231459069
11P0.4450.0781P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021225
(v1.0)
Tpm359069
420760