DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021313
GeneTrim13
SynonymsLEU5
Rfp2
RNF77
Desc.tripartite motif-containing 13
LocusNM_001164220 chr14:62217063-62224782(+)
NM_023233 chr14:62218349-62224782(+)
DB links


Entrez 66597
MGI 1913847
Ensembl ENSMUSG00000035235
Featureprotein-coding
GO(BP)
  •   7 Terms
      signal transduction (GO:0007165)
      positive regulation of cell death (GO:0010942)
      positive regulation of macroautophagy (GO:0016239)
      ER-associated protein catabolic process (GO:0030433)
      positive regulation of I-kappaB kinase/NF-kappaB cascade (GO:0043123)
      proteasomal ubiquitin-dependent protein catabolic process (GO:0043161)
      protein autoubiquitination (GO:0051865)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2021940
(v2.0)
Trim13NM_001164220,NM_02323366597
3.55933240.683230.94636.657442.964663.38878.07194186.08444.339263.4842
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021313
(v1.0)
Trim1366597
Maternal RNA0.9986
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021940
(v2.0)
Trim1366597
560/3370.2193390/3370.094369/3371.2827186/3370.470875/337-0.1086359/337-0.5063
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2021940
(v2.0)
Trim1366597
286/1580.3414187/1580.126160/1582.1213150/1581.243127/158-0.4762198/158-0.2719
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021940
(v2.0)
Trim1366597
56.844710554.14
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2021940
(v2.0)
Trim1366597
14.9746024.96
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
250.039159.80627.26629.89145.68468
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
171.09397.655520.303930.1796.57618
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
261.4391.30074174.352
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
255.19158.201137.676
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
99.17117.743
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
261.5911.28292150.999
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
25.244128.861430.7521
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
30.045619.7451
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
84.967130.5554
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021313
(v1.0)
Trim13NM_001164220,NM_02323366597
121.02799.6869
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021313
(v1.0)
13399J0033B02-3Mm.23959Trim1366597
U015729NAP095526-001Trim13;TC815806Q9CYB0U,F,23.74093.77673.40883.58823.25493.33173.3582
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021313
(v1.0)
1417888_atMm.23959Trim13NM_001164220.1,NM_023233.366597
1761.9251572.85749.1315.175272.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021313
(v1.0)
A_51_P114714Trim13NM_02323366597
11P0.7560.218P
0021313
(v1.0)
A_52_P17788Trim13NM_02323366597
11P1.140.474P
Proteome N/A