DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021479
GeneTsnax
SynonymsTrax
Desc.translin-associated factor X
LocusNM_016909 chr8:127536897-127558092(+)
NM_016909 chr8_random:580370-601515(-)
DB links


Entrez 53424
MGI 1855672
Ensembl ENSMUSG00000056820
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022108
(v2.0)
TsnaxNM_01690953424
27.846861.868734.512726.46535.259235.962137.70237.610641.629333.9624
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021479
(v1.0)
Tsnax53424
Maternal RNA0.98429
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022108
(v2.0)
Tsnax53424
640/3580.3245398/3580.036591/3581.5927236/3580.726163/358-0.4427460/358-0.237
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022108
(v2.0)
Tsnax53424
337/1580.577173/1580.014689/1582.6824193/1581.60467/158-2.2835118/158-1.0112
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022108
(v2.0)
Tsnax53424
38.56146856.71
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022108
(v2.0)
Tsnax53424
9.253625.69
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
64.303923.964219.716124.435426.5916
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021479
(v1.0)
TsnaxFR032962,FR267218,FR346449,NM_01690953424
59.040432.771119.114420.235923.0761
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
67.235610.183926.1455
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
65.628623.723627.9079
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021479
(v1.0)
TsnaxFR032962,FR267218,FR346449,NM_01690953424
33.2641121.238
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
67.274710.044430.6084
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
18.25423.593428.839
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021479
(v1.0)
TsnaxFR032962,FR267218,FR346449,NM_01690953424
18.315421.9789
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021479
(v1.0)
TsnaxNM_01690953424
56.45538.67929
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021479
(v1.0)
TsnaxNM_01690953424
6.697473.75192
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021479
(v1.0)
22004L0932F03-3Mm.5248Tsnax53424
U009967NAP033922-1Tsnax;TC904196Q9QZE7U,F,22.42322.20992.39292.30482.45412.35912.4413
0021479
(v1.0)
22044L0936G11-3Mm.5248Tsnax53424
U009967NAP097640-001Tsnax;TC904195Q9QZE7U,F,22.93483.11182.89133.22362.50572.78152.549
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021479
(v1.0)
1423395_atMm.458292~Mm.5248LOC100039215~Tsnax~NM_016909.2100039215
53424
421.075374.4219.750300.6
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021479
(v1.0)
A_51_P236397TsnaxNM_01690953424
11P0.7540.233P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021479
(v1.0)
Tsnax53424
3604140