DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021509
GeneTsr1
Synonyms
Desc.TSR1 20S rRNA accumulation
LocusNM_177325 chr11:74711582-74722842(+)
DB links


Entrez 104662
MGI 2144566
Ensembl ENSMUSG00000038335
Vega OTTMUSG00000006188
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022140
(v2.0)
Tsr1NM_177325104662
17.92684.279336.2769774.2277119.97949.982241.65913.7697438.956153.1263
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021509
(v1.0)
Tsr1104662
MGA0.98224
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022140
(v2.0)
Tsr1104662
841/4080.5296616/4080.4772890/4084.68562603/4083.996531/408-1.6293261/408-1.2391
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022140
(v2.0)
Tsr1104662
464/1191.4427289/1191.1572699/1196.01741688/1195.128214/119-0.9798126/119-0.5117
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022140
(v2.0)
Tsr1104662
80.345121637.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022140
(v2.0)
Tsr1104662
25.811215516.65
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
4.447314.35455.272283.184929.5688
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021509
(v1.0)
Tsr1FR352152,NM_177325104662
29.137163.2636234.999345.985427.133
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
4.650076.556024.75031
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
4.538934.310282.79095
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
6.245354.46161
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
4.652776.466223.06102
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
51.173580.318326.9088
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
136.59280.1195
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021509
(v1.0)
Tsr1NM_177325104662
7.2859517.3649
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021509
(v1.0)
Tsr1NM_177325104662
2.829221.91811
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021509
(v1.0)
6085H3015H09-3Mm.220843AW550801104662
U012932NAP000615-001TC941284U,F,23.36453.33873.51383.82073.46313.5923.4536
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021509
(v1.0)
1433502_s_atMm.220843Tsr1NM_177325.3104662
00125.775240.05153.45
0021509
(v1.0)
1455643_s_atMm.220843Tsr1NM_177325.3104662
595.75441.5253892.42510136.257342.9
Agilent44K N/A
Proteome N/A