DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021608
GeneTubb3
SynonymsbetaIII-tubulin
Tuj1
Desc.tubulin, beta 3 class III
LocusNM_023279 chr8:125935464-125945910(+)
DB links


Entrez 22152
MGI 107813
Ensembl ENSMUSG00000062380
Vega OTTMUSG00000027611
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022239
(v2.0)
Tubb3NM_02327922152
0.655996296.036437.64213.75686.989329.800751.85147673.87411.663322.5249
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021608
(v1.0)
Tubb322152
Maternal RNA0.95827
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022239
(v2.0)
Tubb322152
712/4940.0145447/494-0.2599512/4943.62051250/4942.6645496/4942.05442484/4941.7287
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022239
(v2.0)
Tubb322152
369/2230.2129223/223-0.1157471/2234.60641103/2233.6227338/2232.63531467/2232.1134
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022239
(v2.0)
Tubb322152
82.97414059.27
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022239
(v2.0)
Tubb322152
18.28026826.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
307.907303.78110.25364.846641.29858
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
273.034238.5578.257064.352511.14498
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
321.9450.239904331.432
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
314.25300.731500.518
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
242.214393.643
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
322.1320.236619548.952
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
9.493274.679628.17711
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
4.305557.81353
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021608
(v1.0)
Tubb3NM_02327922152
111.3062.7182
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021608
(v1.0)
Tubb3NM_02327922152
195.547263.078
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021608
(v1.0)
1415978_atMm.40068Tubb3NM_023279.222152
215.775342.4544.500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021608
(v1.0)
A_51_P381381Tubb3NM_02327922152
1 (0.954 to 1.057)1P1.295 (1.241 to 1.368)1.35E-05P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021608
(v1.0)
Tubb322152
253015184526120