DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021764
GeneUbr5
SynonymsEdd
Edd1
Desc.ubiquitin protein ligase E3 component n-recognin 5
LocusNM_001112721 chr15:37897083-38008608(-)
NM_001081359 chr15:37897083-38008608(-)
DB links


Entrez 70790
MGI 1918040
Ensembl ENSMUSG00000037487
Featureprotein-coding
GO(BP)
  •   11 Terms
      protein polyubiquitination (GO:0000209)
      DNA repair (GO:0006281)
      cellular protein modification process (GO:0006464)
      response to DNA damage stimulus (GO:0006974)
      positive regulation of protein import into nucleus, translocation (GO:0033160)
      positive regulation of catenin import into nucleus (GO:0035413)
      protein ubiquitination involved in ubiquitin-dependent protein catabolic process (GO:0042787)
      progesterone receptor signaling pathway (GO:0050847)
      positive regulation of canonical Wnt receptor signaling pathway (GO:0090263)
      negative regulation of histone H2A K63-linked ubiquitination (GO:1901315)
      negative regulation of double-strand break repair (GO:2000780)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Ubiquitin mediated proteolysis (mmu04120)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022400
(v2.0)
Ubr5NM_001081359,NM_00111272170790
17.25818.6924713.31465.076485.1526.683236.813713.38271.730824.099
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021764
(v1.0)
Ubr570790
MGA0.95251
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022400
(v2.0)
Ubr570790
725/4360.2204502/4360.087530/4363.84581582/4363.183231/436-1.7241258/436-1.3512
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022400
(v2.0)
Ubr570790
384/1690.6681236/1690.3637503/1695.07741429/1694.390911/169-1.7932128/169-0.9918
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022400
(v2.0)
Ubr570790
63.252216438.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022400
(v2.0)
Ubr570790
21.331811917.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
9.034779.2315748.464158.96225.5205
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
174.953142.924755.225998.839481.013
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
9.446686.3121310.0718
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
9.22099.138889.90035
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
246.627310.794
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
9.452176.2256810.8584
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
44.870256.930249.6223
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
1170.051017.07
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
10.92247.7883
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021764
(v1.0)
Ubr5NM_001081359,NM_00111272170790
1.28010.954047
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021764
(v1.0)
11789H3123B06-3Mm.73614432411E13Rik70790
U036111NAP095313-0014432411E13Rik;TC821612,TC799582,TC799581Q9CXE9U,F,22.92773.11973.13133.3282.98932.98822.9654
0021764
(v1.0)
16748K0448E05-3Mm.73614432411E13Rik70790
U036111NAP095313-0014432411E13Rik;TC821612Q9CXE9U,F,23.09153.00542.7953.09252.75642.6962.6444
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021764
(v1.0)
1452718_atMm.476840Ubr5NM_001081359.2,NM_001112721.170790
208.275207.725518.15716.775430.125
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021764
(v1.0)
Ubr570790
010010