DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021864
GeneUpf1
SynonymsPNORF-1
Rent1
Desc.UPF1 regulator of nonsense transcripts homolog (yeast)
LocusNM_030680 chr8:72855421-72877172(-)
NM_001122829 chr8:72855421-72877172(-)
DB links


Entrez 19704
MGI 107995
Ensembl ENSMUSG00000058301
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022502
(v2.0)
Upf1NM_001122829,NM_03068019704
15.756366.209230.579835.609522.348728.94136.9992245.995818.113521.8556
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021864
(v1.0)
Upf119704
Maternal RNA0.941
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022502
(v2.0)
Upf119704
774/5100.0889435/510-0.3449269/5102.6496621/5101.610651/510-1.2479330/510-1.2236
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022502
(v2.0)
Upf119704
367/2110.2845167/211-0.4511217/2113.5675462/2112.44812/211-1.991177/211-2.0324
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022502
(v2.0)
Upf119704
53.760411646.35
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022502
(v2.0)
Upf119704
16.63617721.61
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
68.855321.229326.493515.52274.84035
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
752.899209.448280.859161.09951.8877
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
71.99455.7622423.1616
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
70.273821.016134.0603
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
404.511633.907
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
72.03645.6833237.3562
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
24.528814.987812.6449
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
183.233170.219
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
35.73111.1363
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021864
(v1.0)
Upf1NM_001122829,NM_03068019704
24.546346.4926
NIA60mer N/A
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021864
(v1.0)
A_51_P296057Rent1NM_03068019704
11P1.0510.706P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021864
(v1.0)
Upf119704
1119511255