DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021865
GeneUpf2
Synonyms
Desc.UPF2 regulator of nonsense transcripts homolog (yeast)
LocusNM_001081132 chr2:5872515-5977749(+)
DB links


Entrez 326622
MGI 2449307
Ensembl ENSMUSG00000043241
Vega OTTMUSG00000011208
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022503
(v2.0)
Upf2NM_001081132326622
6.761056.682759.1986815.282411.803311.37956.706898.4137814.451512.4171
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021865
(v1.0)
Upf2326622
2-Cell Transient0.93974
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022503
(v2.0)
Upf2326622
686/4080.2363476/4080.1059238/4082.7872728/4082.159829/408-1.7224279/408-1.1434
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022503
(v2.0)
Upf2326622
337/1750.4305219/1750.2063217/1753.8213539/1752.93636/175-2.6269/175-1.9189
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022503
(v2.0)
Upf2326622
60.272714441.86
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022503
(v2.0)
Upf2326622
18.291610018.29
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
6.943346.3499511.37548.18354.6014
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
25.785322.535318.117117.24478.49653
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
7.25992.472586.92793
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
7.086386.286196.24182
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
145.54111.757
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
7.264122.438726.84582
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
10.53187.901499.98893
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
27.02831.5645
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021865
(v1.0)
Upf2NM_001081132326622
18.37058.37231
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021865
(v1.0)
Upf2NM_001081132326622
4.211973.57501
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021865
(v1.0)
1435030_atMm.31102Upf2NM_001081132.1326622
816.21029.45556.6597.55455.325
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021865
(v1.0)
A_52_P318683Upf2XM_140801326622
11P2.6090.0692P
0021865
(v1.0)
A_52_P36218Upf2XM_140801326622
11P0.4340.125P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021865
(v1.0)
Upf2326622
100100