DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021867
GeneUpf3b
SynonymsRENT3B
UPF3X
Desc.UPF3 regulator of nonsense transcripts homolog B (yeast)
LocusNM_026573 chrX:34631829-34650317(-)
DB links


Entrez 68134
MGI 1915384
Ensembl ENSMUSG00000036572
Vega OTTMUSG00000017109
Featureprotein-coding
GO(BP)
  •   3 Terms
      nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (GO:0000184)
      response to unfolded protein (GO:0006986)
      positive regulation of translation (GO:0045727)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022505
(v2.0)
Upf3bNM_02657368134
4.270037.037297.7335812.17816.355119.27456.484055.7285720.270917.8523
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021867
(v1.0)
Upf3b68134
MGA0.99277
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022505
(v2.0)
Upf3b68134
320/2110.0876227/211-0.010791/2112.3229372/2112.136145/211-0.1679260/211-0.2965
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022505
(v2.0)
Upf3b68134
137/106-0.1413102/106-0.1782/1063.0918309/1062.845614/106-0.818863/106-1.3293
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022505
(v2.0)
Upf3b68134
30.665810928.13
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022505
(v2.0)
Upf3b68134
8.17668010.22
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
7.312525.34759.0636411.36094.48385
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
20.48926.0196118.497127.845115.8576
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
7.645911.561595.83423
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
7.463175.29384.24805
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
6.112855.33874
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
7.650351.540214.65912
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
8.3915210.969414.0711
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
13.867317.5944
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021867
(v1.0)
Upf3bNM_02657368134
27.319120.1818
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021867
(v1.0)
Upf3bNM_02657368134
14.500722.2827
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021867
(v1.0)
6677H3031A12-55730594O13Rik68134
5730594O13RikTC881717,TC8817132.72052.79322.55282.73832.63932.81212.6029
0021867
(v1.0)
7366H3046H10-35730594O13Rik68134
U039318NAP095319-001TC881713Q9CS15U,F2.52572.77242.88392.98612.65362.76182.4183
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021867
(v1.0)
1434842_s_atMm.271160Upf3bNM_026573.268134
480.425284.475391.35688.075287
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021867
(v1.0)
A_51_P162649Upf3bBC05876168134
11P0.5490.107P
0021867
(v1.0)
A_51_P291139Upf3bXM_11078768134
11P0.6070.126P
Proteome N/A