DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021886
GeneUrb1
Synonyms
Desc.URB1 ribosome biogenesis 1 homolog (S. cerevisiae)
LocusNM_029497 chr16:90751772-90810658(-)
DB links


Entrez 207932
MGI 2146468
Ensembl ENSMUSG00000039929
Vega OTTMUSG00000033776
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022527
(v2.0)
Urb1NM_029497207932
1.141875.126315.1911515.474712.91492.954874.454873.5862612.0333.7035
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021886
(v1.0)
Urb1207932
Major ZGA0.99506
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022527
(v2.0)
Urb1207932
694/4500.112442/450-0.1417111/4501.5563376/4501.067998/450-0.1399666/450-0.0337
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022527
(v2.0)
Urb1207932
324/1930.2335216/1930.046102/1932.6071337/1932.12114/193-1.6586119/193-1.2862
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022527
(v2.0)
Urb1207932
92.664615659.4
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022527
(v2.0)
Urb1207932
26.01678430.97
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021886
(v1.0)
Urb1NM_029497207932
5.331353.6090111.52328.950163.14157
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021886
(v1.0)
Urb1NM_029497207932
29.256523.1385109.702112.55430.0279
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
5.574410.4175953.9375
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
5.441183.572772.66981
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
28.693725.7442
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
5.577650.4118762.92816
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
10.66878.641748.33331
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
109.9668.211
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021886
(v1.0)
Urb1NM_029497207932
1.553611.92394
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021886
(v1.0)
Urb1NM_029497207932
6.022525.23441
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021886
(v1.0)
16569K0430D08-3Mm.312354921511H13207932
U037290NAP092625-001TC899706Q9CYN4U,F,23.42383.19843.09113.5092.70373.03352.6579
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021886
(v1.0)
1454841_atMm.328688Urb1NM_029497.1207932
176.85391.675174.75379.2317.85
Agilent44K N/A
Proteome N/A