DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021891
GeneUrod
SynonymsUro-d
Desc.uroporphyrinogen decarboxylase
LocusNM_009478 chr4:116662822-116666980(-)
DB links


Entrez 22275
MGI 98916
Ensembl ENSMUSG00000028684
Vega OTTMUSG00000009782
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022533
(v2.0)
UrodNM_00947822275
38.137137.956414.826675.158379.422880.181229.18416.702781.500996.0713
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021891
(v1.0)
Urod22275
Major ZGA0.95716
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022533
(v2.0)
Urod22275
656/516-0.1662344/516-0.6994193/5162.1562574/5161.480536/516-1.7556263/516-1.5662
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022533
(v2.0)
Urod22275
329/2180.0806149/218-0.6614187/2183.3093544/2182.636718/218-1.4898163/218-1.0121
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022533
(v2.0)
Urod22275
78.23717744.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022533
(v2.0)
Urod22275
6.58281016.52
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021891
(v1.0)
UrodNM_00947822275
39.452710.301555.948355.314320.6948
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021891
(v1.0)
UrodNM_00947822275
52.937813.663170.762963.68725.4185
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021891
(v1.0)
UrodNM_00947822275
41.251513.947111.2392
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021891
(v1.0)
UrodNM_00947822275
40.265510.198112.4057
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021891
(v1.0)
UrodNM_00947822275
21.085931.0968
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021891
(v1.0)
UrodNM_00947822275
41.275413.756113.6061
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021891
(v1.0)
UrodNM_00947822275
51.799453.408256.4405
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021891
(v1.0)
UrodNM_00947822275
62.886472.3632
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021891
(v1.0)
UrodNM_00947822275
11.734221.1331
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021891
(v1.0)
UrodNM_00947822275
4.622491.89722
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021891
(v1.0)
12891H3154D08-5Urod22275
U025423NAP045559-1Urod;TC858591,TC858590,TC858588,TC858587P706973.60923.46683.57353.49993.8953.65483.8317
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021891
(v1.0)
1417206_atMm.46484UrodNM_009478.322275
207.7250000
0021891
(v1.0)
1443849_x_atMm.46484UrodNM_009478.322275
2968.4332.21049.252113.5751320.675
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021891
(v1.0)
A_51_P282092UrodNM_00947822275
11P0.7410.205P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021891
(v1.0)
Urod22275
020020