DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021894
GeneUsf1
SynonymsbHLHb11
upstream stimulatory factor
Desc.upstream transcription factor 1
LocusNM_009480 chr1:173341812-173348873(+)
DB links


Entrez 22278
MGI 99542
Ensembl ENSMUSG00000026641
Vega OTTMUSG00000030990
Featureprotein-coding
GO(BP)
  •   12 Terms
      positive regulation of transcription from RNA polymerase II promoter by glucose (GO:0000432)
      response to hypoxia (GO:0001666)
      glucose metabolic process (GO:0006006)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      transcription from RNA polymerase II promoter (GO:0006366)
      response to UV (GO:0009411)
      late viral mRNA transcription (GO:0019086)
      cellular response to insulin stimulus (GO:0032869)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      lipid homeostasis (GO:0055088)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022537
(v2.0)
Usf1NM_00948022278
22.740538.455541.488889.96460.654136.389216.333252.218678.257345.5486
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021894
(v1.0)
Usf122278
2-Cell Transient0.99786
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022537
(v2.0)
Usf122278
732/4770.1048416/477-0.312973/4770.8764326/4770.77946/477-1.298492/477-0.5533
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022537
(v2.0)
Usf122278
300/1630.3653177/1630.002764/1632.1711289/1632.14046/163-2.5299/163-1.3056
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022537
(v2.0)
Usf122278
73.357115447.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022537
(v2.0)
Usf122278
6.7005788.59
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021894
(v1.0)
Usf1NM_00948022278
39.978728.887267.070342.060211.4922
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021894
(v1.0)
Usf1NM_00948022278
377.244264.87521.281286.43971.2034
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
41.80148.3164331.5166
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
40.802328.597238.7356
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
124.189139.316
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
41.82578.2025242.484
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
62.096740.610854.321
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
141.609246.865
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021894
(v1.0)
Usf1NM_00948022278
3.766773.26646
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021894
(v1.0)
Usf1NM_00948022278
0.5821714.83953
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021894
(v1.0)
3321C0637H03-3Mm.8Usf122278
Usf12.53072.64492.47592.51992.97012.73312.9179
0021894
(v1.0)
12898H3154F06-5U001088NAP033581-1Usf1;TC805813O091352.31172.22172.28762.40552.43852.29052.3825
0021894
(v1.0)
19137L0249G12-3Mm.8Usf122278
U001088NAP012782-001Usf1;TC921645,TC805813O091352.39282.47232.32342.52552.58262.61312.5973
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021894
(v1.0)
1448805_atMm.8Usf1NM_009480.222278
0068.47500
Agilent44K N/A
Proteome N/A