DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021923
GeneUsp3
Synonyms
Desc.ubiquitin specific peptidase 3
LocusNM_144937 chr9:66365688-66440787(-)
DB links


Entrez 235441
MGI 2152450
Ensembl ENSMUSG00000032376
Vega OTTMUSG00000023730
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022570
(v2.0)
Usp3NM_144937235441
22.109665.058286.15349.086024.799037.451229.20068106.9735.625687.56545
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021923
(v1.0)
Usp3235441
Maternal RNA0.95295
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022570
(v2.0)
Usp3235441
727/4300.2443432/430-0.1092530/4303.86531404/4303.03115/430-2.7043129/430-2.3228
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022570
(v2.0)
Usp3235441
461/1840.8089225/1840.1731515/1844.99661243/1844.06898/184-2.328155/184-2.3102
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022570
(v2.0)
Usp3235441
34.406413525.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022570
(v2.0)
Usp3235441
8.31961018.24
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021923
(v1.0)
Usp3NM_144937235441
67.616559.44776.759053.325156.51702
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021923
(v1.0)
Usp3NM_144937235441
255.346182.76816.28919.8989720.0523
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
70.69928.0857264.8587
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
69.009458.850879.2469
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
455.069486.969
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
70.74037.9749786.9153
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
6.257833.210563.89781
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
22.450825.3363
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021923
(v1.0)
Usp3NM_144937235441
23.83098.29211
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021923
(v1.0)
Usp3NM_144937235441
5.029147.56846
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021923
(v1.0)
2187C0299G04-3Mm.117018U031020NAP031015-1Usp3;TC864243Q91W362.00022.14591.93942.17632.16862.11542.1245
0021923
(v1.0)
3996C0910F03-3Mm.38976Usp3235441
U031020NAP033612-1Usp3;TC864243Q91W363.29833.4553.09522.88272.63612.70112.7504
0021923
(v1.0)
9387H3080E01-3Mm.38976Usp3235441
U031020NAP097093-001Usp3;TC864245,TC864243Q91W362.63762.89862.77352.49332.14862.2342.386
0021923
(v1.0)
21389L0851B02-3U031020NAP035604-1Usp3;TC895671Q91W362.62952.53682.65522.56942.97462.79672.6724
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021923
(v1.0)
1425022_atMm.38976Usp3NM_144937.3235441
884.35605264.750157.625
0021923
(v1.0)
1435531_atMm.38976Usp3NM_144937.3235441
0630.325565.6500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021923
(v1.0)
A_51_P330630Usp3NM_144937235441
11P1.0310.822P
0021923
(v1.0)
A_52_P173485Usp3NM_144937235441
11P1.3610.201P
Proteome N/A