DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021934
GeneUsp4
SynonymsUnp
Desc.ubiquitin specific peptidase 4 (proto-oncogene)
LocusNM_011678 chr9:108250162-108294860(+)
DB links


Entrez 22258
MGI 98905
Ensembl ENSMUSG00000032612
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022581
(v2.0)
Usp4NM_01167822258
35.51658.020659.547721.101324.986411.569433.661865.156822.817713.328
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021934
(v1.0)
Usp422258
Maternal RNA0.99282
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022581
(v2.0)
Usp422258
558/428-0.1298344/428-0.4302129/4281.8416359/4281.073221/428-2.2382189/428-1.7704
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022581
(v2.0)
Usp422258
289/1450.4794151/145-0.0573120/1453.2241320/1452.4539/145-1.84190/145-1.2732
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022581
(v2.0)
Usp422258
52.309314536.08
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022581
(v2.0)
Usp422258
12.67339912.8
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021934
(v1.0)
Usp4NM_01167822258
60.314541.380915.723817.359223.7804
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021934
(v1.0)
Usp4FR351819,NM_01167822258
566.181291.636134.77167.298212.082
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021934
(v1.0)
Usp4NM_01167822258
63.064412.988645.1474
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021934
(v1.0)
Usp4NM_01167822258
61.557140.965448.2827
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021934
(v1.0)
Usp4FR351819,NM_01167822258
263.635424.606
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021934
(v1.0)
Usp4NM_01167822258
63.10112.810752.9549
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021934
(v1.0)
Usp4NM_01167822258
14.557716.76115.7891
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021934
(v1.0)
Usp4FR351819,NM_01167822258
275.856293.85
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021934
(v1.0)
Usp4NM_01167822258
48.08353.11143
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021934
(v1.0)
Usp4NM_01167822258
0.6646530.265001
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021934
(v1.0)
12295H3140A01-3Mm.3974Usp422258
U011022NAP005010-001Usp4;TC921269,TC903434,TC903433,TC903431P35123U,F,23.28493.38673.6423.43063.32693.42363.3309
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021934
(v1.0)
1450892_a_atMm.3974Usp4NM_011678.222258
381.9209.025172.10126.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021934
(v1.0)
A_51_P473195Usp4NM_01167822258
11P0.5860.124P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021934
(v1.0)
Usp422258
360380