DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0021988
GeneVapa
Synonymssynaptobrevin-associated protein of 33kDa
VAP33
Desc.vesicle-associated membrane protein, associated protein A
LocusNM_013933 chr17:65929393-65962895(-)
DB links


Entrez 30960
MGI 1353561
Ensembl ENSMUSG00000024091
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2022635
(v2.0)
VapaNM_01393330960
58.856552.104869.923589.7827157.60879.553768.054741.6029145.86187.6637
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0021988
(v1.0)
Vapa30960
MGA0.98848
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022635
(v2.0)
Vapa30960
756/3400.6385545/3400.5632305/3403.3985643/3402.2422129/3400.6532568/3400.1406
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2022635
(v2.0)
Vapa30960
423/1171.3339274/1171.1049281/1174.7279570/1173.587628/117-0.005172/117-0.0431
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022635
(v2.0)
Vapa30960
42.838113631.5
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2022635
(v2.0)
Vapa30960
7.0578967.35
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021988
(v1.0)
VapaNM_01393330960
54.157448.31466.8635109.30248.2384
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0021988
(v1.0)
VapaNM_01393330960
68.214854.943679.6581131.63358.0729
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0021988
(v1.0)
VapaNM_01393330960
56.626521.524452.7116
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0021988
(v1.0)
VapaNM_01393330960
55.273147.828930.764
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0021988
(v1.0)
VapaNM_01393330960
55.796237.1378
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0021988
(v1.0)
VapaNM_01393330960
56.659421.229633.7409
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0021988
(v1.0)
VapaNM_01393330960
61.9052105.536100.52
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0021988
(v1.0)
VapaNM_01393330960
130.211124.06
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0021988
(v1.0)
VapaNM_01393330960
11.279693.8679
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0021988
(v1.0)
VapaNM_01393330960
10.683725.1999
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0021988
(v1.0)
14691J0749H04-3Mm.23943Vapa30960
U038005NAP095500-001Vapa;TC925258,TC925255,TC925254Q9WV55U,F,23.52113.48183.34693.6443.82333.90983.7872
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0021988
(v1.0)
1416465_a_atMm.266767VapaNM_013933.330960
648.45894.825753.4251332.851247.55
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0021988
(v1.0)
A_51_P361788VapaNM_01393330960
11P1.4130.179P
0021988
(v1.0)
A_52_P19051VapaNM_01393330960
11P0.860.373P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0021988
(v1.0)
Vapa30960
13218407026