DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0022012

Gene

Vdac1

Synonyms

Vdac5

Description

voltage-dependent anion channel 1

Locus

NM_011694 UCSC: chr11:52174617-52202898(+) OLP: chr11:52174617-52202898(+)

DB links

Entrez 22333
MGI 106919
Ensembl ENSMUSG00000020402
Vega OTTMUSG00000005626

Feature

protein-coding

GO_BP

12 Terms

GO_MF

5 Terms

GO_CC

9 Terms

KEGG

3 Terms

see DBTMEE:2022659 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	24.6849	61.2839	74.3424	100.321	68.2378

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	25.8104	38.5655	66.862

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	25.1935	60.6685	56.0595

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	25.8254	38.0373	61.4842

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	68.8295	96.8638	77.4669

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0022012 (v1.0)	Vdac1	NM_011694	22333	40.3895	29.7939

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0022012 (v1.0)	Vdac1	NM_011694	22333	17.2759	14.0273

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0022012 (v1.0)	18274	L0075H01-3	Mm.3555	Vdac1	22333	U012584	NAP122455-001	Vdac1;	TC852259	Q60932	U,F,2	2.8589	2.9748	2.8438	2.9471	2.8686	3.0194	3.1039

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0022012 (v1.0)	1415998_at	Mm.3555	Vdac1	NM_011694.4	22333	94.275	181.25	358.25	417.3	759.9
0022012 (v1.0)	1436992_x_at	Mm.3555	Vdac1	NM_011694.4	22333	320.975	1014.58	1572.95	2573.07	3301.12
0022012 (v1.0)	1437192_x_at	Mm.3555	Vdac1	NM_011694.4	22333	158.725	239.625	440.625	750.425	1251.82
0022012 (v1.0)	1437947_x_at	Mm.3555	Vdac1	NM_011694.4	22333	40	78.175	180.8	225.825	275.3

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0022012 (v1.0)	A_51_P130459	Vdac1	NM_011694	22333	1	1	P	0.105	0.0282	P
0022012 (v1.0)	A_52_P909310	Vdac1	NM_011694	22333	1	1	P	1.2	0.319	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0022012 (v1.0)	Vdac1	22333	2	0.67	1	2	1.33	2