DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022377
GeneVmp1
SynonymsTango5
Tmem49
Desc.vacuole membrane protein 1
LocusNM_029478 chr11:86397367-86497324(-)
DB links


Entrez 75909
MGI 1923159
Ensembl ENSMUSG00000018171
Vega OTTMUSG00000001205
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023027
(v2.0)
Vmp1NM_029478,NR_02973875909
20.759421.076810.185486.8187170.78317.3898121.3136.51148136.05821.6731
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022377
(v1.0)
Vmp175909
MGA0.99751
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023027
(v2.0)
Vmp175909
632/3900.1832437/3900.0478204/3902.629501/3901.686212/390-2.864494/390-2.6327
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023027
(v2.0)
Vmp175909
342/1820.3953220/1820.1565200/1823.6512484/1822.72559/182-2.160749/182-2.4564
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023027
(v2.0)
Vmp175909
45.016911439.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023027
(v2.0)
Vmp175909
13.06428016.33
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
21.89827.042764.6552118.29485.323
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022377
(v1.0)
Vmp1FR096952,FR279400,NM_029478,NR_02973875909
24.1827.1298876.6573138.72134.182
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
22.89667.591917.68374
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
22.34936.971994.82351
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022377
(v1.0)
Vmp1FR096952,FR279400,NM_029478,NR_02973875909
7.240295.077
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
22.90997.487935.29026
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
59.8606114.21793.9106
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022377
(v1.0)
Vmp1FR096952,FR279400,NM_029478,NR_02973875909
137.223113.166
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022377
(v1.0)
Vmp1NM_02947875909
6.7473876.1783
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022377
(v1.0)
Vmp1NM_02947875909
2.117961.97547
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022377
(v1.0)
13936J0238C08-3Mm.245844930579A11Rik75909
U033226NAP032080-14930579A11Rik;TC793168Q99KU0U,F,23.57753.47623.84754.50824.31214.28224.1295
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022377
(v1.0)
1421491_a_atMm.390398Vmp1NM_029478.375909
125.425144.1301.425457.225149.625
0022377
(v1.0)
1423722_atMm.390398Vmp1NM_029478.375909
637.3371.1821.2251781.3644.15
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022377
(v1.0)
A_52_P127362Tmem49NM_02947875909
11P0.9270.588P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022377
(v1.0)
Tmem4975909
010010