DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022396
GeneVps29
SynonymsPEP11
Desc.vacuolar protein sorting 29 (S. pombe)
LocusNM_019780 chr5:122804422-122813296(+)
DB links


Entrez 56433
MGI 1928344
Ensembl ENSMUSG00000029462
Vega OTTMUSG00000026702
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023046
(v2.0)
Vps29NM_01978056433
56.427853.075446.253911.26327.8472663.701774.901848.462911.044770.6779
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022396
(v1.0)
Vps2956433
Maternal RNA0.99836
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023046
(v2.0)
Vps2956433
769/4230.3488468/4230.0296152/4232.0931290/4230.783151/423-0.9804443/423-0.5312
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023046
(v2.0)
Vps2956433
381/1650.6912210/1650.2304145/1653.3222272/1652.035919/165-1.0226154/165-0.6935
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023046
(v2.0)
Vps2956433
79.614514953.43
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023046
(v2.0)
Vps2956433
25.26629227.46
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022396
(v1.0)
Vps29NM_01978056433
55.157431.86648.392125.4502253.3996
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022396
(v1.0)
Vps29FR281505,NM_01978056433
67.10935.06479.480486.4619563.5629
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022396
(v1.0)
Vps29NM_01978056433
57.672220.636234.7669
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022396
(v1.0)
Vps29NM_01978056433
56.293731.546435.9051
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022396
(v1.0)
Vps29FR281505,NM_01978056433
35.61441.4477
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022396
(v1.0)
Vps29NM_01978056433
57.705720.353639.3795
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022396
(v1.0)
Vps29NM_01978056433
7.769795.262417.64476
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022396
(v1.0)
Vps29FR281505,NM_01978056433
6.391499.48659
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022396
(v1.0)
Vps29NM_01978056433
15.8099.93042
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022396
(v1.0)
Vps29NM_01978056433
23.850619.0188
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022396
(v1.0)
11809H3123D08-3Mm.28356Vps2956433
U006136NAP007243-001Vps29;TC909455,TC909454,TC909453Q9QZ88U,F3.07763.36492.97542.90582.90243.18293.3104
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022396
(v1.0)
1417659_atMm.216528Vps29NM_019780.156433
534.075375.45252.42598.125523.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022396
(v1.0)
A_51_P264554Vps29NM_01978056433
11P0.6560.148P
0022396
(v1.0)
A_52_P456071Vps29NM_01978056433
11P0.4970.0905P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022396
(v1.0)
Vps2956433
120130