DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022405
GeneVps39
SynonymsmVam6
Vam6
Vam6P
Desc.vacuolar protein sorting 39 (yeast)
LocusNR_027618 chr2:120142197-120178869(-)
NM_178851 chr2:120142197-120178869(-)
NM_147153 chr2:120142197-120178869(-)
DB links


Entrez 269338
MGI 2443189
Ensembl ENSMUSG00000027291
Vega OTTMUSG00000015284
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023055
(v2.0)
Vps39NM_147153,NM_178851,NR_027618269338
10.171144.727859.23275.827556.5635111.48139.3036364.30176.4446910.2872
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022405
(v1.0)
Vps39269338
Maternal RNA0.94681
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023055
(v2.0)
Vps39269338
600/4100.0364409/410-0.119477/4101.1649176/4100.11068/410-3.466358/410-3.3872
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023055
(v2.0)
Vps39269338
254/1650.1089167/165-0.098271/1652.3023158/1651.2563/165-3.344530/165-2.9964
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023055
(v2.0)
Vps39269338
65.005310462.51
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023055
(v2.0)
Vps39269338
18.30075533.27
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
46.489341.06624.335354.541516.60632
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851,NR_027618269338
2052.321638.53240.782227.061233.297
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
48.60883.7196644.8041
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
47.44740.653947.6321
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851,NR_027618269338
1270.78782.188
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
48.6373.6687152.2413
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
4.013864.385014.47427
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851,NR_027618269338
269.146273.113
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
23.53943.99243
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022405
(v1.0)
Vps39NM_147153,NM_178851269338
4.951368.01623
NIA60mer N/A
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022405
(v1.0)
A_51_P460828Vps39AK129210269338
11P1.070.622P
Proteome N/A