DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022408
GeneVps4a
Synonyms
Desc.vacuolar protein sorting 4a (yeast)
LocusNM_126165 chr8:109555226-109569656(+)
DB links


Entrez 116733
MGI 1890520
Ensembl ENSMUSG00000031913
Vega OTTMUSG00000031758
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023058
(v2.0)
Vps4aNM_126165116733
34.304257.798167.918528.119337.340525.427120.957477.183845.501822.5834
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022408
(v1.0)
Vps4a116733
Maternal RNA0.94924
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023058
(v2.0)
Vps4a116733
808/4540.3182511/4540.0543465/4543.60071314/4542.857677/454-0.4965482/454-0.5117
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023058
(v2.0)
Vps4a116733
456/2110.5967265/2110.2116446/2114.60341260/2113.893430/211-0.7373161/211-0.9828
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023058
(v2.0)
Vps4a116733
54.714911149.29
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023058
(v2.0)
Vps4a116733
23.79277930.12
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
60.077847.021120.94325.917514.8461
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
186.621146.97853.27376.565845.8037
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
62.816812.545451.3011
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
61.315446.54957.146
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
239.641244.38
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
62.853312.373662.6758
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
19.3925.024431.515
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
56.988360.9628
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022408
(v1.0)
Vps4aNM_126165116733
35.798510.8031
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022408
(v1.0)
Vps4aNM_126165116733
7.044884.61583
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022408
(v1.0)
12020H3131C09-3Mm.24437Vps4a116733
U009784NAP105309-1Vps4a;TC869551Q9CTW32.73973.03672.89783.10922.56922.81142.6444
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022408
(v1.0)
1417510_atMm.236004Vps4aNM_126165.1116733
499.025375.05319.275175.6204.175
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022408
(v1.0)
Vps4a116733
2522103