DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022434
GeneVta1
Synonyms
Desc.Vps20-associated 1 homolog (S. cerevisiae)
LocusNM_025418 chr10:14375139-14425295(-)
DB links


Entrez 66201
MGI 1913451
Ensembl ENSMUSG00000019868
Vega OTTMUSG00000031918
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023085
(v2.0)
Vta1NM_02541866201
14.04121.149169.82813.271119.357419.28124.9446179.98123.523322.846
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022434
(v1.0)
Vta166201
Maternal RNA0.95471
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023085
(v2.0)
Vta166201
481/3210.0704387/3210.153177/3211.5065265/3211.048936/321-1.0778277/321-0.8087
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023085
(v2.0)
Vta166201
227/161-0.0171188/1610.106875/1612.4132252/1611.96114/161-1.403180/161-1.5902
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023085
(v2.0)
Vta166201
36.85518841.88
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023085
(v2.0)
Vta166201
13.0826221.1
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022434
(v1.0)
Vta1NM_02541866201
125.899117.419.8738513.439817.7638
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022434
(v1.0)
Vta1NM_02541866201
1459.191223.41137.264147.382172.186
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
131.6385.13457128.097
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
128.492116.232133.296
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
133.119156.7
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
131.7155.06424146.194
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
9.1416512.976616.3117
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
134.081137.493
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022434
(v1.0)
Vta1NM_02541866201
24.446619.6761
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022434
(v1.0)
Vta1NM_02541866201
120.219115.975
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022434
(v1.0)
14789J0818F02-3Mm.288991110059P08Rik66201
U031557NAP003418-001TC831146,TC831143Q9CR26U,F4.65744.63383.85183.59213.50493.62993.7445
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022434
(v1.0)
1415722_a_atMm.227983Vta1NM_025418.366201
1086.752100.7287114.225500.85
0022434
(v1.0)
1441646_atMm.227983Vta1NM_025418.366201
0217.775000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022434
(v1.0)
A_52_P4854501110059P08RikNM_02541866201
11P0.7260.193P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022434
(v1.0)
Vta166201
422422