DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0022693
GeneYbx1
SynonymsdbpB
DNA binding protein B
EF1A
MSY1
Nsep1
YB-1
Desc.Y box protein 1
LocusNM_011732 chr4:118949932-118967118(-)
DB links


Entrez 22608
MGI 99146
Ensembl ENSMUSG00000028639
Vega OTTMUSG00000009259
Featureprotein-coding
GO(BP)
  •   13 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      in utero embryonic development (GO:0001701)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      mRNA processing (GO:0006397)
      positive regulation of cell proliferation (GO:0008284)
      RNA splicing (GO:0008380)
      negative regulation of apoptotic process (GO:0043066)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      negative regulation of insulin receptor signaling pathway (GO:0046627)
      negative regulation of striated muscle cell differentiation (GO:0051154)
      positive regulation of cell division (GO:0051781)
      CRD-mediated mRNA stabilization (GO:0070934)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2023345
(v2.0)
Ybx1NM_01173222608
191.611115.039257.356386.595547.094357.714107.802280.682528.681475.737
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0022693
(v1.0)
Ybx122608
Major ZGA0.95299
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023345
(v2.0)
Ybx122608
658/4520.0289412/452-0.2493205/4522.4292574/4521.670543/452-1.3162520/452-0.3962
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2023345
(v2.0)
Ybx122608
310/1820.2542171/182-0.2049198/1823.6368538/1822.87787/182-2.482688/182-1.631
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023345
(v2.0)
Ybx122608
55.102116234.01
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2023345
(v2.0)
Ybx122608
15.694811513.65
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
119.582177.824287.453379.14676.8708
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
36.416344.140573.544798.690221.839
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
125.03470.074194.01
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
122.045176.039207.754
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
44.82550.3353
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
125.10769.1142227.857
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
266.136366.081367.042
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
97.624996.2048
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0022693
(v1.0)
Ybx1NM_01173222608
206.338169.008
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0022693
(v1.0)
Ybx1NM_01173222608
14.742124.3137
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0022693
(v1.0)
9765H3086B04-3Mm.21054Nsep122608
U025465NAP092351-001TC874175,TC874174,TC874173P27817U,F,24.33694.12824.59665.29824.68344.90114.8359
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0022693
(v1.0)
1418624_atMm.258204Ybx1NM_011732.222608
1704.355046.7755188.155976.553843.8
0022693
(v1.0)
1430720_atMm.258204Ybx1NM_011732.222608
0123.175000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0022693
(v1.0)
A_51_P437657Nsep1NM_01173222608
11P0.6280.135P
0022693
(v1.0)
A_52_P187132Nsep1NM_01173222608
11P0.9650.783P
0022693
(v1.0)
A_52_P363833Nsep1NM_01173222608
11P0.8660.386P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0022693
(v1.0)
Ybx122608
9701831100